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Gene regulation in the immune system by long noncoding RNAs

Nature immunology, 2017-08, Vol.18 (9), p.962-972

2017

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Long Noncoding RNA in Hematopoiesis and Immunity

Immunity (Cambridge, Mass.), 2015-05, Vol.42 (5), p.792-804

2015

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Embryonic and Adult-Derived Resident Cardiac Macrophages Are Maintained through Distinct Mechanisms at Steady State and during Inflammation

Immunity (Cambridge, Mass.), 2014-01, Vol.40 (1), p.91-104

2014

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Coupled Single-Cell CRISPR Screening and Epigenomic Profiling Reveals Causal Gene Regulatory Networks

Cell, 2019-01, Vol.176 (1-2), p.361-376.e17

2019

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Integrative analysis of single-cell genomics data by coupled nonnegative matrix factorizations

Proceedings of the National Academy of Sciences - PNAS, 2018-07, Vol.115 (30), p.7723-7728

2018

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A Long Noncoding RNA lincRNA-EPS Acts as a Transcriptional Brake to Restrain Inflammation

Cell, 2016-06, Vol.165 (7), p.1672-1685

2016

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Discovery and functional interrogation of SARS-CoV-2 RNA-host protein interactions

Cell, 2021-04, Vol.184 (9), p.2394-2411.e16

2021

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Enhancer connectome in primary human cells identifies target genes of disease-associated DNA elements

Nature genetics, 2017-11, Vol.49 (11), p.1602-1612

2017

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Heme-Mediated SPI-C Induction Promotes Monocyte Differentiation into Iron-Recycling Macrophages

Cell, 2014-03, Vol.156 (6), p.1223-1234

2014

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Affinity-Restricted Memory B Cells Dominate Recall Responses to Heterologous Flaviviruses

Immunity (Cambridge, Mass.), 2020-11, Vol.53 (5), p.1078-1094.e7

2020

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Interrogation of human hematopoiesis at single-cell and single-variant resolution

Nature genetics, 2019-04, Vol.51 (4), p.683-693

2019

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Cryptic activation of an Irf8 enhancer governs cDC1 fate specification

Nature immunology, 2019-09, Vol.20 (9), p.1161-1173

2019

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An Nfil3-Zeb2-Id2 pathway imposes Irf8 enhancer switching during cDC1 development

Nature immunology, 2019-09, Vol.20 (9), p.1174-1185

2019

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Extrathymic Aire-Expressing Cells Are a Distinct Bone Marrow-Derived Population that Induce Functional Inactivation of CD4+ T Cells

Immunity (Cambridge, Mass.), 2013-09, Vol.39 (3), p.560-572

2013

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IRF-8 extinguishes neutrophil production and promotes dendritic cell lineage commitment in both myeloid and lymphoid mouse progenitors

Blood, 2012-03, Vol.119 (9), p.2003-2012

2012

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Skin basal cell carcinomas assemble a pro-tumorigenic spatially organized and self-propagating Trem2+ myeloid niche

Nature communications, 2023-05, Vol.14 (1), p.2685-2685, Article 2685

2023

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Notch2-dependent DC2s mediate splenic germinal center responses

Proceedings of the National Academy of Sciences - PNAS, 2018-10, Vol.115 (42), p.10726-10731

2018

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Identification of presented SARS-CoV-2 HLA class I and HLA class II peptides using HLA peptidomics

Cell reports (Cambridge), 2021-06, Vol.35 (13), p.109305-109305, Article 109305

2021

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Chromatin accessibility landscapes of skin cells in systemic sclerosis nominate dendritic cells in disease pathogenesis

Nature communications, 2020-11, Vol.11 (1), p.5843-5843, Article 5843

2020

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Bcl11a controls Flt3 expression in early hematopoietic progenitors and is required for pDC development in vivo

PloS one, 2013-05, Vol.8 (5), p.e64800

2013

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Convergent epigenetic evolution drives relapse in acute myeloid leukemia

eLife, 2024-04, Vol.13

2024

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High-throughput and single-cell T cell receptor sequencing technologies

Nature methods, 2021-08, Vol.18 (8), p.881-892

2021

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Epigenetic regulation of T cell exhaustion

Nature immunology, 2022-06, Vol.23 (6), p.848-860

2022

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Chromatin Landscape Underpinning Human Dendritic Cell Heterogeneity

Cell reports (Cambridge), 2020-09, Vol.32 (12), p.108180-108180, Article 108180

2020

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Enhancer Connectome Nominates Target Genes of Inherited Risk Variants from Inflammatory Skin Disorders

Journal of investigative dermatology, 2019-03, Vol.139 (3), p.605-614

2019

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Gene regulation in the immune system by long noncoding RNAs

Long Noncoding RNA in Hematopoiesis and Immunity

Embryonic and Adult-Derived Resident Cardiac Macrophages Are Maintained through Distinct Mechanisms at Steady State and during Inflammation

Coupled Single-Cell CRISPR Screening and Epigenomic Profiling Reveals Causal Gene Regulatory Networks

Integrative analysis of single-cell genomics data by coupled nonnegative matrix factorizations

A Long Noncoding RNA lincRNA-EPS Acts as a Transcriptional Brake to Restrain Inflammation

Discovery and functional interrogation of SARS-CoV-2 RNA-host protein interactions

Enhancer connectome in primary human cells identifies target genes of disease-associated DNA elements

Heme-Mediated SPI-C Induction Promotes Monocyte Differentiation into Iron-Recycling Macrophages

Affinity-Restricted Memory B Cells Dominate Recall Responses to Heterologous Flaviviruses

Interrogation of human hematopoiesis at single-cell and single-variant resolution

Cryptic activation of an Irf8 enhancer governs cDC1 fate specification

An Nfil3-Zeb2-Id2 pathway imposes Irf8 enhancer switching during cDC1 development

Extrathymic Aire-Expressing Cells Are a Distinct Bone Marrow-Derived Population that Induce Functional Inactivation of CD4+ T Cells

IRF-8 extinguishes neutrophil production and promotes dendritic cell lineage commitment in both myeloid and lymphoid mouse progenitors

Skin basal cell carcinomas assemble a pro-tumorigenic spatially organized and self-propagating Trem2+ myeloid niche

Notch2-dependent DC2s mediate splenic germinal center responses

Identification of presented SARS-CoV-2 HLA class I and HLA class II peptides using HLA peptidomics

Chromatin accessibility landscapes of skin cells in systemic sclerosis nominate dendritic cells in disease pathogenesis

Bcl11a controls Flt3 expression in early hematopoietic progenitors and is required for pDC development in vivo

Convergent epigenetic evolution drives relapse in acute myeloid leukemia

High-throughput and single-cell T cell receptor sequencing technologies

Epigenetic regulation of T cell exhaustion

Chromatin Landscape Underpinning Human Dendritic Cell Heterogeneity

Enhancer Connectome Nominates Target Genes of Inherited Risk Variants from Inflammatory Skin Disorders

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