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Methods in Biomedical Informatics: A Pragmatic Approach

Sarkar, Indra Neil

1, 2013

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The impact of taxon sampling on phylogenetic inference: a review of two decades of controversy

Briefings in bioinformatics, 2012-01, Vol.13 (1), p.122-134

2012

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Solr-Plant: efficient extraction of plant names from text

BMC bioinformatics, 2019-05, Vol.20 (1), p.263-263, Article 263

2019

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Small-Molecule Inhibition of Choline Catabolism in Pseudomonas aeruginosa and Other Aerobic Choline-Catabolizing Bacteria

Applied and Environmental Microbiology, 2011-07, Vol.77 (13), p.4383-4389

2011

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Augmenting bacterial similarity measures using a graph-based genome representation

mSystems, 2024-07, Vol.9 (7), p.e0049724

2024

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Darwin Core: an evolving community-developed biodiversity data standard

PloS one, 2012-01, Vol.7 (1), p.e29715-e29715

2012

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Statewide evaluation of COVID-19 vaccine hesitancy in Rhode Island

PloS one, 2022-06, Vol.17 (6), p.e0268587-e0268587

2022

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Molecular approach to the identification of fish in the South China Sea

PloS one, 2012-02, Vol.7 (2), p.e30621-e30621

2012

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Oligo- and polymetastatic progression in lung metastasis(es) patients is associated with specific microRNAs

PloS one, 2012-12, Vol.7 (12), p.e50141-e50141

2012

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The Barcode of Life Data Portal: bridging the biodiversity informatics divide for DNA barcoding

PloS one, 2011-07, Vol.6 (7), p.e14689-e14689

2011

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Mining the electronic health record for disease knowledge

Methods in molecular biology (Clifton, N.J.), 2014, Vol.1159, p.269

2014

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Curated multiple sequence alignment for the Adenomatous Polyposis Coli (APC) gene and accuracy of in silico pathogenicity predictions

PloS one, 2020-08, Vol.15 (8), p.e0233673-e0233673

2020

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DNA barcoding of recently diverged species: relative performance of matching methods

PloS one, 2012-01, Vol.7 (1), p.e30490-e30490

2012

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Salivary Transcriptome of the North American Medicinal Leech, Macrobdella decora

The Journal of parasitology, 2010-12, Vol.96 (6), p.1211-1221

2010

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Health Information Exchange as a Global Utility

Chest, 2023-05, Vol.163 (5), p.1023-1025

Sarkar, Indra Neil

2023

Volltextzugriff (PDF)

Drug repurposing: mining protozoan proteomes for targets of known bioactive compounds

Journal of the American Medical Informatics Association : JAMIA, 2014-03, Vol.21 (2), p.238-244

2014

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Geospatial and Temporal Analysis of Thyroid Cancer Incidence in a Rural Population

Thyroid (New York, N.Y.), 2015-07, Vol.25 (7), p.812

2015

Volltextzugriff (PDF)

Access to community-based reproductive health services and incidence of low birthweight delivery among refugee and displaced mothers: a retrospective study in the Thailand-Myanmar border region

BMJ open, 2022-01, Vol.12 (1), p.e052571-e052571

2022

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Complete sequencing of five araliaceae chloroplast genomes and the phylogenetic implications

PloS one, 2013-10, Vol.8 (10), p.e78568

2013

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Appearance of new tetraspanin genes during vertebrate evolution

Genomics (San Diego, Calif.), 2008-04, Vol.91 (4), p.326-334

2008

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Identifying Herbal Adverse Events From Spontaneous Reporting Systems Using Taxonomic Name Resolution Approach

Bioinformatics and biology insights, 2020, Vol.14, p.117793222092135-1177932220921350

2020

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Editorial: Bioinformatics education in the 21st century

Briefings in bioinformatics, 2010-11, Vol.11 (6), p.535-536, Article 535

Neil Sarkar, Indra

2010

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Automated detection of off-label drug use

PloS one, 2014-02, Vol.9 (2), p.e89324-e89324

2014

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Genome-wide mutagenesis of Xanthomonas axonopodis pv. citri reveals novel genetic determinants and regulation mechanisms of biofilm formation

PloS one, 2011-07, Vol.6 (7), p.e21804

2011

Volltextzugriff (PDF)

Research Strategies for Biomedical and Health Informatics. Some Thought-provoking and Critical Proposals to Encourage Scientific Debate on the Nature of Good Research in Medical Informatics

Methods of information in medicine, 2017-01, Vol.56 (S 01), p.e1

2017

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Methods in Biomedical Informatics: A Pragmatic Approach

The impact of taxon sampling on phylogenetic inference: a review of two decades of controversy

Solr-Plant: efficient extraction of plant names from text

Small-Molecule Inhibition of Choline Catabolism in Pseudomonas aeruginosa and Other Aerobic Choline-Catabolizing Bacteria

Augmenting bacterial similarity measures using a graph-based genome representation

Darwin Core: an evolving community-developed biodiversity data standard

Statewide evaluation of COVID-19 vaccine hesitancy in Rhode Island

Molecular approach to the identification of fish in the South China Sea

Oligo- and polymetastatic progression in lung metastasis(es) patients is associated with specific microRNAs

The Barcode of Life Data Portal: bridging the biodiversity informatics divide for DNA barcoding

Mining the electronic health record for disease knowledge

Curated multiple sequence alignment for the Adenomatous Polyposis Coli (APC) gene and accuracy of in silico pathogenicity predictions

DNA barcoding of recently diverged species: relative performance of matching methods

Salivary Transcriptome of the North American Medicinal Leech, Macrobdella decora

Health Information Exchange as a Global Utility

Drug repurposing: mining protozoan proteomes for targets of known bioactive compounds

Geospatial and Temporal Analysis of Thyroid Cancer Incidence in a Rural Population

Access to community-based reproductive health services and incidence of low birthweight delivery among refugee and displaced mothers: a retrospective study in the Thailand-Myanmar border region

Complete sequencing of five araliaceae chloroplast genomes and the phylogenetic implications

Appearance of new tetraspanin genes during vertebrate evolution

Identifying Herbal Adverse Events From Spontaneous Reporting Systems Using Taxonomic Name Resolution Approach

Editorial: Bioinformatics education in the 21st century

Automated detection of off-label drug use

Genome-wide mutagenesis of Xanthomonas axonopodis pv. citri reveals novel genetic determinants and regulation mechanisms of biofilm formation

Research Strategies for Biomedical and Health Informatics. Some Thought-provoking and Critical Proposals to Encourage Scientific Debate on the Nature of Good Research in Medical Informatics

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