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Current practice in plankton metabarcoding: optimization and error management

Journal of plankton research, 2019-09, Vol.41 (5), p.571-582

Santoferrara, Luciana F

2019

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Three redescriptions in Tintinnopsis (Protista: Ciliophora: Tintinnina) from coastal waters of China, with cytology and phylogenetic analyses based on ribosomal RNA genes

BMC microbiology, 2020-12, Vol.20 (1), p.374-374, Article 374

2020

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Unexpected biodiversity of ciliates in marine samples from below the photic zone

Molecular ecology, 2016-08, Vol.25 (16), p.3987-4000

2016

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De novo transcriptomes of a mixotrophic and a heterotrophic ciliate from marine plankton

PloS one, 2014-07, Vol.9 (7), p.e101418-e101418

2014

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The respiratory microbiota of three cohabiting beluga whales (Delphinapterus leucas) under human care

Frontiers in Marine Science, 2023-12, Vol.10

2023

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Molecular signature characters complement taxonomic diagnoses: A bioinformatic approach exemplified by ciliated protists (Ciliophora, Oligotrichea)

Molecular phylogenetics and evolution, 2022-05, Vol.170, p.107433-107433, Article 107433

2022

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Phylogeny, classification and diversity of Choreotrichia and Oligotrichia (Ciliophora, Spirotrichea)

Molecular phylogenetics and evolution, 2017-07, Vol.112, p.12-22

2017

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Global and local DNA (meta)barcoding reveal new biogeography patterns in tintinnid ciliates

Journal of plankton research, 2018-05, Vol.40 (3), p.209-221

2018

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The importance of type species and their correct identification: A key example from tintinnid ciliates (Alveolata, Ciliophora, Spirotricha)

The Journal of eukaryotic microbiology, 2021-11, Vol.68 (6), p.e12865-n/a

2021

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The photic‐aphotic divide is a strong ecological and evolutionary force determining the distribution of ciliates (Alveolata, Ciliophora) in the ocean

The Journal of eukaryotic microbiology, 2023-09, Vol.70 (5), p.e12976-n/a

2023

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Patterns and processes in microbial biogeography: do molecules and morphologies give the same answers?

The ISME Journal, 2016-07, Vol.10 (7), p.1779-1790

2016

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The Mixoplankton Database (MDB): Diversity of photo‐phago‐trophic plankton in form, function, and distribution across the global ocean

The Journal of eukaryotic microbiology, 2023-07, Vol.70 (4), p.e12972-n/a

2023

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Genome architecture used to supplement species delineation in two cryptic marine ciliates

Molecular ecology resources, 2022-11, Vol.22 (8), p.2880-2896

2022

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Pyrosequencing for assessing diversity of eukaryotic microbes: analysis of data on marine planktonic ciliates and comparison with traditional methods

Environmental microbiology, 2014-09, Vol.16 (9), p.2752-2763

2014

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EukRef‐Ciliophora: a manually curated, phylogeny‐based database of small subunit rRNA gene sequences of ciliates

Environmental microbiology, 2018-06, Vol.20 (6), p.2218-2230

2018

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Morphological variability, spatial distribution and abundance of Helicostomella species (Ciliophora: Tintinnina) in relation to environmental factors (Argentine shelf; 40-55°S)

Scientia marina, 2009-12, Vol.73 (4), p.701-716

2009

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Integrating dimensions of biodiversity in choreotrichs and oligotrichs of marine plankton

European journal of protistology, 2017-10, Vol.61 (Pt B), p.323-330

2017

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Discrimination of Closely Related Species in Tintinnid Ciliates: New Insights on Crypticity and Polymorphism in the Genus Helicostomella

Protist, 2015-02, Vol.166 (1), p.78-92

2015

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Utility of Genetic Markers and Morphology for Species Discrimination within the Order Tintinnida (Ciliophora, Spirotrichea)

Protist, 2013-01, Vol.164 (1), p.24-36

2013

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Diversity of diversity: conceptual and methodological differences in biodiversity estimates of eukaryotic microbes as compared to bacteria

Trends in microbiology (Regular ed.), 2014-08, Vol.22 (8), p.432-437

2014

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Dartintinnus alderae n. g., n. sp., a Brackish Water Tintinnid (Ciliophora, Spirotrichea) with Dual‐ended Lorica Collapsibility

The Journal of eukaryotic microbiology, 2018-05, Vol.65 (3), p.400-411

2018

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Updating Biodiversity Studies in Loricate Protists: The Case of the Tintinnids (Alveolata, Ciliophora, Spirotrichea)

The Journal of eukaryotic microbiology, 2016-09, Vol.63 (5), p.651-656

2016

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Combined Genome and Transcriptome Analyses of the Ciliate Schmidingerella arcuata (Spirotrichea) Reveal Patterns of DNA Elimination, Scrambling, and Inversion

Genome biology and evolution, 2020-09, Vol.12 (9), p.1616-1622

2020

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Distinct assemblage of planktonic ciliates dominates both photic and deep waters on the New England shelf

Marine ecology. Progress series (Halstenbek), 2015-04, Vol.526, p.1-9

2015

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Abundance and diversity of tintinnids (planktonic ciliates) under contrasting levels of productivity in the Argentine Shelf and Drake Passage

Journal of sea research, 2012-07, Vol.71, p.25-30

2012

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Current practice in plankton metabarcoding: optimization and error management

Three redescriptions in Tintinnopsis (Protista: Ciliophora: Tintinnina) from coastal waters of China, with cytology and phylogenetic analyses based on ribosomal RNA genes

Unexpected biodiversity of ciliates in marine samples from below the photic zone

De novo transcriptomes of a mixotrophic and a heterotrophic ciliate from marine plankton

The respiratory microbiota of three cohabiting beluga whales (Delphinapterus leucas) under human care

Molecular signature characters complement taxonomic diagnoses: A bioinformatic approach exemplified by ciliated protists (Ciliophora, Oligotrichea)

Phylogeny, classification and diversity of Choreotrichia and Oligotrichia (Ciliophora, Spirotrichea)

Global and local DNA (meta)barcoding reveal new biogeography patterns in tintinnid ciliates

The importance of type species and their correct identification: A key example from tintinnid ciliates (Alveolata, Ciliophora, Spirotricha)

The photic‐aphotic divide is a strong ecological and evolutionary force determining the distribution of ciliates (Alveolata, Ciliophora) in the ocean

Patterns and processes in microbial biogeography: do molecules and morphologies give the same answers?

The Mixoplankton Database (MDB): Diversity of photo‐phago‐trophic plankton in form, function, and distribution across the global ocean

Genome architecture used to supplement species delineation in two cryptic marine ciliates

Pyrosequencing for assessing diversity of eukaryotic microbes: analysis of data on marine planktonic ciliates and comparison with traditional methods

EukRef‐Ciliophora: a manually curated, phylogeny‐based database of small subunit rRNA gene sequences of ciliates

Morphological variability, spatial distribution and abundance of Helicostomella species (Ciliophora: Tintinnina) in relation to environmental factors (Argentine shelf; 40-55°S)

Integrating dimensions of biodiversity in choreotrichs and oligotrichs of marine plankton

Discrimination of Closely Related Species in Tintinnid Ciliates: New Insights on Crypticity and Polymorphism in the Genus Helicostomella

Utility of Genetic Markers and Morphology for Species Discrimination within the Order Tintinnida (Ciliophora, Spirotrichea)

Diversity of diversity: conceptual and methodological differences in biodiversity estimates of eukaryotic microbes as compared to bacteria

Dartintinnus alderae n. g., n. sp., a Brackish Water Tintinnid (Ciliophora, Spirotrichea) with Dual‐ended Lorica Collapsibility

Updating Biodiversity Studies in Loricate Protists: The Case of the Tintinnids (Alveolata, Ciliophora, Spirotrichea)

Combined Genome and Transcriptome Analyses of the Ciliate Schmidingerella arcuata (Spirotrichea) Reveal Patterns of DNA Elimination, Scrambling, and Inversion

Distinct assemblage of planktonic ciliates dominates both photic and deep waters on the New England shelf

Abundance and diversity of tintinnids (planktonic ciliates) under contrasting levels of productivity in the Argentine Shelf and Drake Passage

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