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A Unified View of Polymer, Dumbbell, and Oligonucleotide DNA Nearest-Neighbor Thermodynamics

Proceedings of the National Academy of Sciences - PNAS, 1998-02, Vol.95 (4), p.1460-1465

SantaLucia, John

1998

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Statistical mechanical simulation of polymeric DNA melting with MELTSIM

Bioinformatics (Oxford, England), 1999-05, Vol.15 (5), p.370-375

1999

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Thermodynamic parameters for DNA sequences with dangling ends

Nucleic acids research, 2000-05, Vol.28 (9), p.1929-1934

2000

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Context Dependence of Hydrogen Bond Free Energy Revealed by Substitutions in an RNA Hairpin

Science (American Association for the Advancement of Science), 1992-04, Vol.256 (5054), p.217-219

1992

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Thermodynamic Parameters for an Expanded Nearest-Neighbor Model for Formation of RNA Duplexes with Watson−Crick Base Pairs

Biochemistry (Easton), 1998-10, Vol.37 (42), p.14719-14735

1998

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Improved Nearest-Neighbor Parameters for Predicting DNA Duplex Stability

Biochemistry (Easton), 1996-03, Vol.35 (11), p.3555-3562

1996

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Unique structural and stabilizing roles for the individual pseudouridine residues in the 1920 region of Escherichia coli 23S rRNA

Nucleic acids research, 2000-05, Vol.28 (10), p.2075-2083

2000

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Determination of RNA Structure and Thermodynamics

Annual review of biochemistry, 1993-01, Vol.62 (1), p.255-285

1993

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Measuring the thermodynamics of RNA secondary structure formation

BIOPOLYM, 1997, Vol.44 (3), p.309-319

1997

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Structure of (rGGCGAGCC)2 in solution from NMR and restrained molecular dynamics

Biochemistry (Easton), 1993-11, Vol.32 (47), p.12612-12623

1993

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In vivo determination of RNA structure-function relationships: analysis of the 790 loop in ribosomal RNA

Journal of molecular biology, 1997-06, Vol.269 (5), p.732-743

1997

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Thermodynamics and NMR of internal G.T mismatches in DNA

Biochemistry (Easton), 1997-08, Vol.36 (34), p.10581-10594

1997

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Stabilities of consecutive A.C, C.C, G.G, U.C, and U.U mismatches in RNA internal loops : evidence for stable hydrogen-bonded U.U and C.C+ pairs

Biochemistry (Easton), 1991-08, Vol.30 (33), p.8242-8251

1991

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Structure and function of the conserved 690 hairpin in Escherichia coli 16 S ribosomal RNA. III. functional analysis of the 690 loop

Journal of molecular biology, 2001-03, Vol.307 (1), p.213-228

2001

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Structure and function of the conserved 690 hairpin in Escherichia coli 16 s ribosomal RNA: analysis of the stem nucleotides

Journal of molecular biology, 2000-06, Vol.300 (1), p.113-126

2000

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Nearest-Neighbor Thermodynamics of Internal A·C Mismatches in DNA: Sequence Dependence and pH Effects

Biochemistry (Easton), 1998-06, Vol.37 (26), p.9435-9444

1998

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Effect of Mismatched Complementary Strands and 5‘-Change in Sequence Context on the Thermodynamics and Structure of Benzo[a]pyrene-Modified Oligonucleotides

Biochemistry (Easton), 1998-06, Vol.37 (23), p.8575-8583

1998

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Nearest Neighbor Thermodynamic Parameters for Internal G·A Mismatches in DNA

Biochemistry (Easton), 1998-02, Vol.37 (8), p.2170-2179

1998

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Functional group substitutions as probes of hydrogen bonding between GA mismatches in RNA internal loops

Journal of the American Chemical Society, 1991-05, Vol.113 (11), p.4313-4322

1991

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Effects of GA mismatches on the structure and thermodynamics of RNA internal loops

Biochemistry (Easton), 1990-09, Vol.29 (37), p.8813-8819

1990

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Synthesis and NMR of RNA with Selective isotopic enrichment in the bases

Nucleic acids research, 1995-12, Vol.23 (23), p.4913-4921

1995

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The thermodynamics of DNA structural motifs

Annual review of biophysics and biomolecular structure, 2004-01, Vol.33 (1), p.415-440

2004

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Solution Structure of (rGGCAGGCC)2 by Two-Dimensional NMR and the Iterative Relaxation Matrix Approach

Biochemistry (Easton), 1997-04, Vol.36 (15), p.4449-4460

1997

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Structure and function of the conserved 690 hairpin in Escherichia coli 16 s ribosomal RNA. II. NMR solution structure

Journal of molecular biology, 2001-03, Vol.307 (1), p.197-211

2001

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Structure and Function of the Conserved 690 Hairpin in Escherichia coli 16 S Ribosomal RNA. II.NMR Solution Structure

Journal of molecular biology, 2001-03, Vol.307 (1), p.197-211

2001

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A Unified View of Polymer, Dumbbell, and Oligonucleotide DNA Nearest-Neighbor Thermodynamics

Statistical mechanical simulation of polymeric DNA melting with MELTSIM

Thermodynamic parameters for DNA sequences with dangling ends

Context Dependence of Hydrogen Bond Free Energy Revealed by Substitutions in an RNA Hairpin

Thermodynamic Parameters for an Expanded Nearest-Neighbor Model for Formation of RNA Duplexes with Watson−Crick Base Pairs

Improved Nearest-Neighbor Parameters for Predicting DNA Duplex Stability

Unique structural and stabilizing roles for the individual pseudouridine residues in the 1920 region of Escherichia coli 23S rRNA

Determination of RNA Structure and Thermodynamics

Measuring the thermodynamics of RNA secondary structure formation

Structure of (rGGCGAGCC)2 in solution from NMR and restrained molecular dynamics

In vivo determination of RNA structure-function relationships: analysis of the 790 loop in ribosomal RNA

Thermodynamics and NMR of internal G.T mismatches in DNA

Stabilities of consecutive A.C, C.C, G.G, U.C, and U.U mismatches in RNA internal loops : evidence for stable hydrogen-bonded U.U and C.C+ pairs

Structure and function of the conserved 690 hairpin in Escherichia coli 16 S ribosomal RNA. III. functional analysis of the 690 loop

Structure and function of the conserved 690 hairpin in Escherichia coli 16 s ribosomal RNA: analysis of the stem nucleotides

Nearest-Neighbor Thermodynamics of Internal A·C Mismatches in DNA: Sequence Dependence and pH Effects

Effect of Mismatched Complementary Strands and 5‘-Change in Sequence Context on the Thermodynamics and Structure of Benzo[a]pyrene-Modified Oligonucleotides

Nearest Neighbor Thermodynamic Parameters for Internal G·A Mismatches in DNA

Functional group substitutions as probes of hydrogen bonding between GA mismatches in RNA internal loops

Effects of GA mismatches on the structure and thermodynamics of RNA internal loops

Synthesis and NMR of RNA with Selective isotopic enrichment in the bases

The thermodynamics of DNA structural motifs

Solution Structure of (rGGCAGGCC)2 by Two-Dimensional NMR and the Iterative Relaxation Matrix Approach

Structure and function of the conserved 690 hairpin in Escherichia coli 16 s ribosomal RNA. II. NMR solution structure

Structure and Function of the Conserved 690 Hairpin in Escherichia coli 16 S Ribosomal RNA. II.NMR Solution Structure

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