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The Role of the Membrane in the Structure and Biophysical Robustness of the Dengue Virion Envelope

Structure (London), 2016-03, Vol.24 (3), p.375-382

2016

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From Coarse Grained to Atomistic: A Serial Multiscale Approach to Membrane Protein Simulations

Journal of chemical theory and computation, 2011-04, Vol.7 (4), p.1157-1166

2011

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Induced Polarization in Molecular Dynamics Simulations of the 5-HT3 Receptor Channel

Journal of the American Chemical Society, 2020-05, Vol.142 (20), p.9415-9427

2020

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Specific interactions of peripheral membrane proteins with lipids: what can molecular simulations show us?

Bioscience reports, 2022-04, Vol.42 (4), p.1

2022

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Defining the Membrane-Associated State of the PTEN Tumor Suppressor Protein

Biophysical journal, 2013-02, Vol.104 (3), p.613-621

2013

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Structures of the EphA2 Receptor at the Membrane: Role of Lipid Interactions

Structure (London), 2016-02, Vol.24 (2), p.337-347

2016

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Accurate Prediction of Ligand Affinities for a Proton-Dependent Oligopeptide Transporter

Cell chemical biology, 2016-02, Vol.23 (2), p.299-309

2016

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Computational Modeling of Realistic Cell Membranes

Chemical reviews, 2019-05, Vol.119 (9), p.6184-6226

2019

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Coarse-Grain Simulations Reveal Movement of the Synaptobrevin C-Terminus in Response to Piconewton Forces

Biophysical journal, 2012-09, Vol.103 (5), p.959-969

2012

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Lipid interaction sites on channels, transporters and receptors: Recent insights from molecular dynamics simulations

Biochimica et biophysica acta, 2016-10, Vol.1858 (10), p.2390-2400

2016

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Interactions of the Auxilin-1 PTEN-like Domain with Model Membranes Result in Nanoclustering of Phosphatidyl Inositol Phosphates

Biophysical journal, 2013-07, Vol.105 (1), p.137-145

2013

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Cryo-EM reveals two distinct serotonin-bound conformations of full-length 5-HT3A receptor

Nature (London), 2018-11, Vol.563 (7730), p.270-274

2018

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Biophysical and Computational Studies of Membrane Penetration by the GRP1 Pleckstrin Homology Domain

Structure (London), 2011-09, Vol.19 (9), p.1338-1346

2011

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Organization and Dynamics of Receptor Proteins in a Plasma Membrane

Journal of the American Chemical Society, 2015-11, Vol.137 (46), p.14694-14704

2015

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Lipid clustering correlates with membrane curvature as revealed by molecular simulations of complex lipid bilayers

PLoS computational biology, 2014-10, Vol.10 (10), p.e1003911-e1003911

2014

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Exploring Peptide-Membrane Interactions with Coarse-Grained MD Simulations

Biophysical journal, 2011-04, Vol.100 (8), p.1940-1948

2011

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PtdIns(4,5)P2 stabilizes active states of GPCRs and enhances selectivity of G-protein coupling

Nature (London), 2018-07, Vol.559 (7714), p.423-427

2018

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Structural basis of Smoothened regulation by its extracellular domains

Nature (London), 2016-07, Vol.535 (7613), p.517-522

2016

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MemProtMD: Automated Insertion of Membrane Protein Structures into Explicit Lipid Membranes

Structure (London), 2015-07, Vol.23 (7), p.1350-1361

2015

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Band 3, the human red cell chloride/bicarbonate anion exchanger (AE1, SLC4A1), in a structural context

Biochimica et biophysica acta, 2016-07, Vol.1858 (7), p.1507-1532

2016

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Reduced lateral mobility of lipids and proteins in crowded membranes

PLoS computational biology, 2013-04, Vol.9 (4), p.e1003033-e1003033

2013

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Transmembrane helix prediction: a comparative evaluation and analysis

Protein engineering, design and selection, 2005-06, Vol.18 (6), p.295-308

2005

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Interactions of Pleckstrin Homology Domains with Membranes: Adding Back the Bilayer via High-Throughput Molecular Dynamics

Structure (London), 2016-08, Vol.24 (8), p.1421-1431

2016

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The Glycosphingolipid GM3 Modulates Conformational Dynamics of the Glucagon Receptor

Biophysical journal, 2020-07, Vol.119 (2), p.300-313

2020

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Molecular Simulation Approaches to Membrane Proteins

Structure (London), 2011-11, Vol.19 (11), p.1562-1572

2011

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The Role of the Membrane in the Structure and Biophysical Robustness of the Dengue Virion Envelope

From Coarse Grained to Atomistic: A Serial Multiscale Approach to Membrane Protein Simulations

Induced Polarization in Molecular Dynamics Simulations of the 5-HT3 Receptor Channel

Specific interactions of peripheral membrane proteins with lipids: what can molecular simulations show us?

Defining the Membrane-Associated State of the PTEN Tumor Suppressor Protein

Structures of the EphA2 Receptor at the Membrane: Role of Lipid Interactions

Accurate Prediction of Ligand Affinities for a Proton-Dependent Oligopeptide Transporter

Computational Modeling of Realistic Cell Membranes

Coarse-Grain Simulations Reveal Movement of the Synaptobrevin C-Terminus in Response to Piconewton Forces

Lipid interaction sites on channels, transporters and receptors: Recent insights from molecular dynamics simulations

Interactions of the Auxilin-1 PTEN-like Domain with Model Membranes Result in Nanoclustering of Phosphatidyl Inositol Phosphates

Cryo-EM reveals two distinct serotonin-bound conformations of full-length 5-HT3A receptor

Biophysical and Computational Studies of Membrane Penetration by the GRP1 Pleckstrin Homology Domain

Organization and Dynamics of Receptor Proteins in a Plasma Membrane

Lipid clustering correlates with membrane curvature as revealed by molecular simulations of complex lipid bilayers

Exploring Peptide-Membrane Interactions with Coarse-Grained MD Simulations

PtdIns(4,5)P2 stabilizes active states of GPCRs and enhances selectivity of G-protein coupling

Structural basis of Smoothened regulation by its extracellular domains

MemProtMD: Automated Insertion of Membrane Protein Structures into Explicit Lipid Membranes

Band 3, the human red cell chloride/bicarbonate anion exchanger (AE1, SLC4A1), in a structural context

Reduced lateral mobility of lipids and proteins in crowded membranes

Transmembrane helix prediction: a comparative evaluation and analysis

Interactions of Pleckstrin Homology Domains with Membranes: Adding Back the Bilayer via High-Throughput Molecular Dynamics

The Glycosphingolipid GM3 Modulates Conformational Dynamics of the Glucagon Receptor

Molecular Simulation Approaches to Membrane Proteins

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