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Structural architecture of the human long non-coding RNA, steroid receptor RNA activator

Nucleic acids research, 2012-06, Vol.40 (11), p.5034

2012

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A G-Rich Motif in the lncRNA Braveheart Interacts with a Zinc-Finger Transcription Factor to Specify the Cardiovascular Lineage

Molecular cell, 2016-10, Vol.64 (1), p.37-50

2016

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Scaling molecular dynamics beyond 100,000 processor cores for large‐scale biophysical simulations

Journal of computational chemistry, 2019-08, Vol.40 (21), p.1919-1930

2019

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Zinc-finger protein CNBP alters the 3-D structure of lncRNA Braveheart in solution

Nature communications, 2020-01, Vol.11 (1), p.148-148, Article 148

2020

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Regulation of the Mammalian Elongation Cycle by Subunit Rolling: A Eukaryotic-Specific Ribosome Rearrangement

Cell, 2014-07, Vol.158 (1), p.121-131

2014

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Geometric alignment of aminoacyl-tRNA relative to catalytic centers of the ribosome underpins accurate mRNA decoding

Nature communications, 2023-09, Vol.14 (1), p.5582-5582, Article 5582

2023

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Rise of the RNA Machines: Exploring the Structure of Long Non-Coding RNAs

Journal of molecular biology, 2013-10, Vol.425 (19), p.3731-3746

2013

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COOLAIR Antisense RNAs Form Evolutionarily Conserved Elaborate Secondary Structures

Cell reports (Cambridge), 2016-09, Vol.16 (12), p.3087-3096

2016

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Tools for the cryo-EM gold rush: going from the cryo-EM map to the atomistic model

Bioscience reports, 2017-12, Vol.37 (6)

2017

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Connecting the kinetics and energy landscape of tRNA translocation on the ribosome

PLoS computational biology, 2013-03, Vol.9 (3), p.e1003003-e1003003

2013

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Quantitative comparison between sub-millisecond time resolution single-molecule FRET measurements and 10-second molecular simulations of a biosensor protein

PLoS computational biology, 2020-11, Vol.16 (11), p.e1008293-e1008293

2020

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Four-dimensional chromosome reconstruction elucidates the spatiotemporal reorganization of the mammalian X chromosome

Proceedings of the National Academy of Sciences - PNAS, 2021-10, Vol.118 (42), p.1

2021

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Cryo-EM of Ribosomal 80S Complexes with Termination Factors Reveals the Translocated Cricket Paralysis Virus IRES

Molecular cell, 2015-02, Vol.57 (3), p.422-432

2015

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Functional Role of the Sarcin–Ricin Loop of the 23S rRNA in the Elongation Cycle of Protein Synthesis

Journal of molecular biology, 2012-06, Vol.419 (3-4), p.125-138

2012

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Improved quality metrics for association and reproducibility in chromatin accessibility data using mutual information

BMC bioinformatics, 2023-11, Vol.24 (1), p.1-441, Article 441

2023

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Head swivel on the ribosome facilitates translocation by means of intra-subunit tRNA hybrid sites

Nature (London), 2010-12, Vol.468 (7324), p.713-716

2010

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Free State Conformational Sampling of the SAM-I Riboswitch Aptamer Domain

Structure (London), 2010-07, Vol.18 (7), p.787-797

2010

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Tackling structures of long noncoding RNAs

International Journal of Molecular Sciences, 2013-12, Vol.14 (12), p.23672-23684

2013

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Tracking fluctuation hotspots on the yeast ribosome through the elongation cycle

Nucleic acids research, 2017-05, Vol.45 (8), p.4958

2017

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Large-scale simulations of nucleoprotein complexes: ribosomes, nucleosomes, chromatin, chromosomes and CRISPR

Current opinion in structural biology, 2019-04, Vol.55 (C), p.104-113

Sanbonmatsu, Karissa Y

2019

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Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome

Proceedings of the National Academy of Sciences - PNAS, 2014-05, Vol.111 (20), p.7284-7289

2014

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A magnesium-induced triplex pre-organizes the SAM-II riboswitch

PLoS computational biology, 2017-03, Vol.13 (3), p.e1005406-e1005406

2017

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Identification and Characterization of a Class of MALAT1-like Genomic Loci

Cell reports (Cambridge), 2017-05, Vol.19 (8), p.1723-1738

2017

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Excited states of ribosome translocation revealed through integrative molecular modeling

Proceedings of the National Academy of Sciences - PNAS, 2011-11, Vol.108 (47), p.18943-18948

2011

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Functional and Structural Analysis of a Highly-Expressed Yersinia pestis Small RNA following Infection of Cultured Macrophages

PloS one, 2016-12, Vol.11 (12), p.e0168915-e0168915

2016

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Structural architecture of the human long non-coding RNA, steroid receptor RNA activator

A G-Rich Motif in the lncRNA Braveheart Interacts with a Zinc-Finger Transcription Factor to Specify the Cardiovascular Lineage

Scaling molecular dynamics beyond 100,000 processor cores for large‐scale biophysical simulations

Zinc-finger protein CNBP alters the 3-D structure of lncRNA Braveheart in solution

Regulation of the Mammalian Elongation Cycle by Subunit Rolling: A Eukaryotic-Specific Ribosome Rearrangement

Geometric alignment of aminoacyl-tRNA relative to catalytic centers of the ribosome underpins accurate mRNA decoding

Rise of the RNA Machines: Exploring the Structure of Long Non-Coding RNAs

COOLAIR Antisense RNAs Form Evolutionarily Conserved Elaborate Secondary Structures

Tools for the cryo-EM gold rush: going from the cryo-EM map to the atomistic model

Connecting the kinetics and energy landscape of tRNA translocation on the ribosome

Quantitative comparison between sub-millisecond time resolution single-molecule FRET measurements and 10-second molecular simulations of a biosensor protein

Four-dimensional chromosome reconstruction elucidates the spatiotemporal reorganization of the mammalian X chromosome

Cryo-EM of Ribosomal 80S Complexes with Termination Factors Reveals the Translocated Cricket Paralysis Virus IRES

Functional Role of the Sarcin–Ricin Loop of the 23S rRNA in the Elongation Cycle of Protein Synthesis

Improved quality metrics for association and reproducibility in chromatin accessibility data using mutual information

Head swivel on the ribosome facilitates translocation by means of intra-subunit tRNA hybrid sites

Free State Conformational Sampling of the SAM-I Riboswitch Aptamer Domain

Tackling structures of long noncoding RNAs

Tracking fluctuation hotspots on the yeast ribosome through the elongation cycle

Large-scale simulations of nucleoprotein complexes: ribosomes, nucleosomes, chromatin, chromosomes and CRISPR

Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome

A magnesium-induced triplex pre-organizes the SAM-II riboswitch

Identification and Characterization of a Class of MALAT1-like Genomic Loci

Excited states of ribosome translocation revealed through integrative molecular modeling

Functional and Structural Analysis of a Highly-Expressed Yersinia pestis Small RNA following Infection of Cultured Macrophages

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