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Limitations and challenges in protein stability prediction upon genome variations: towards future applications in precision medicine

Computational and structural biotechnology journal, 2020-01, Vol.18, p.1968-1979

2020

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Deep learning methods to predict amyotrophic lateral sclerosis disease progression

Scientific reports, 2022-08, Vol.12 (1), p.13738-10, Article 13738

2022

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Signature literature review reveals AHCY, DPYSL3, and NME1 as the most recurrent prognostic genes for neuroblastoma

BioData mining, 2023-03, Vol.16 (1), p.7-7, Article 7

2023

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A Deep-Learning Sequence-Based Method to Predict Protein Stability Changes Upon Genetic Variations

Genes, 2021-06, Vol.12 (6), p.911

2021

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Unravelling the instability of mutational signatures extraction via archetypal analysis

Frontiers in genetics, 2023-01, Vol.13, p.1049501-1049501

2023

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Influence of Model Structures on Predictors of Protein Stability Changes from Single-Point Mutations

Genes, 2023-12, Vol.14 (12), p.2228

2023

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Challenges in predicting stabilizing variations: An exploration

Frontiers in molecular biosciences, 2023-01, Vol.9, p.1075570-1075570

2023

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Necroptosis-driving genes RIPK1, RIPK3 and MLKL-p are associated with intratumoral CD3+ and CD8+ T cell density and predict prognosis in hepatocellular carcinoma

Journal for immunotherapy of cancer, 2022-03, Vol.10 (3), p.e004031

2022

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Protein Stability Perturbation Contributes to the Loss of Function in Haploinsufficient Genes

Frontiers in molecular biosciences, 2021-02, Vol.8, p.620793-620793

2021

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DNA methylation profiling reveals common signatures of tumorigenesis and defines epigenetic prognostic subtypes of canine Diffuse Large B-cell Lymphoma

Scientific reports, 2017-09, Vol.7 (1), p.11591-11, Article 11591

2017

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MiR-200c-3p Contrasts PD-L1 Induction by Combinatorial Therapies and Slows Proliferation of Epithelial Ovarian Cancer through Downregulation of β-Catenin and c-Myc

Cells (Basel, Switzerland), 2021-03, Vol.10 (3), p.519

2021

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Editorial: Computational and experimental protein variant interpretation in the era of precision medicine

Frontiers in molecular biosciences, 2024, Vol.11, p.1363813-1363813

2024

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Calcineurin Gamma Catalytic Subunit PPP3CC Inhibition by miR-200c-3p Affects Apoptosis in Epithelial Ovarian Cancer

Genes, 2021-09, Vol.12 (9), p.1400

2021

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Variability of transient elastography-based spleen stiffness performed at 100 Hz

European radiology experimental, 2023-12, Vol.7 (1), p.79-79, Article 79

2023

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Transcriptome Analysis Identified Significant Differences in Gene Expression Variability Between WM and IgM-MGUS BM B Cell Clones

Blood, 2016-12, Vol.128 (22), p.5089-5089

2016

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β-Arrestin-1 expression and epithelial-to-mesenchymal transition in laryngeal carcinoma

The International journal of biological markers, 2019-03, Vol.34 (1), p.33-40

2019

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Atrial fibrillation after orthotopic heart transplantatation: Pathophysiology and clinical impact

International journal of cardiology. Heart & vasculature, 2021-02, Vol.32, p.100710-100710, Article 100710

2021

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Temporal Transcriptome Analysis Reveals Dynamic Gene Expression Patterns Driving β-Cell Maturation

Frontiers in cell and developmental biology, 2021-05, Vol.9, p.648791-648791

2021

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Effect of size and heterogeneity of samples on biomarker discovery: synthetic and real data assessment

PloS one, 2012-03, Vol.7 (3), p.e32200-e32200

2012

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Predicting protein stability changes upon single-point mutation: a thorough comparison of the available tools on a new dataset

Briefings in bioinformatics, 2022-03, Vol.23 (2)

2022

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The transcriptional response in human umbilical vein endothelial cells exposed to insulin: a dynamic gene expression approach

PloS one, 2010-12, Vol.5 (12), p.e14390-e14390

2010

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MUSE-XAE: MUtational Signature Extraction with eXplainable AutoEncoder enhances tumour types classification

Bioinformatics (Oxford, England), 2024-05, Vol.40 (5)

2024

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FunPat: function-based pattern analysis on RNA-seq time series data

BMC genomics, 2015-06, Vol.16 (S6), p.S2-S2, Article S2

2015

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Limitations and challenges in protein stability prediction upon genome variations: towards future applications in precision medicine

Deep learning methods to predict amyotrophic lateral sclerosis disease progression

Signature literature review reveals AHCY, DPYSL3, and NME1 as the most recurrent prognostic genes for neuroblastoma

A Deep-Learning Sequence-Based Method to Predict Protein Stability Changes Upon Genetic Variations

Unravelling the instability of mutational signatures extraction via archetypal analysis

Influence of Model Structures on Predictors of Protein Stability Changes from Single-Point Mutations

Challenges in predicting stabilizing variations: An exploration

Necroptosis-driving genes RIPK1, RIPK3 and MLKL-p are associated with intratumoral CD3+ and CD8+ T cell density and predict prognosis in hepatocellular carcinoma

Protein Stability Perturbation Contributes to the Loss of Function in Haploinsufficient Genes

DNA methylation profiling reveals common signatures of tumorigenesis and defines epigenetic prognostic subtypes of canine Diffuse Large B-cell Lymphoma

MiR-200c-3p Contrasts PD-L1 Induction by Combinatorial Therapies and Slows Proliferation of Epithelial Ovarian Cancer through Downregulation of β-Catenin and c-Myc

Editorial: Computational and experimental protein variant interpretation in the era of precision medicine

Calcineurin Gamma Catalytic Subunit PPP3CC Inhibition by miR-200c-3p Affects Apoptosis in Epithelial Ovarian Cancer

Variability of transient elastography-based spleen stiffness performed at 100 Hz

Transcriptome Analysis Identified Significant Differences in Gene Expression Variability Between WM and IgM-MGUS BM B Cell Clones

β-Arrestin-1 expression and epithelial-to-mesenchymal transition in laryngeal carcinoma

Atrial fibrillation after orthotopic heart transplantatation: Pathophysiology and clinical impact

Temporal Transcriptome Analysis Reveals Dynamic Gene Expression Patterns Driving β-Cell Maturation

Challenges and Opportunities of Precision Medicine in Sickle Cell Disease: Novel European Approach by GenoMed4All Consortium and ERN‐EuroBloodNet

Effect of size and heterogeneity of samples on biomarker discovery: synthetic and real data assessment

Predicting protein stability changes upon single-point mutation: a thorough comparison of the available tools on a new dataset

The transcriptional response in human umbilical vein endothelial cells exposed to insulin: a dynamic gene expression approach

MUSE-XAE: MUtational Signature Extraction with eXplainable AutoEncoder enhances tumour types classification

FunPat: function-based pattern analysis on RNA-seq time series data

Long-term outcomes and predictive ability of non-invasive scoring systems in patients with non-alcoholic fatty liver disease

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