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PhyloFisher: A phylogenomic package for resolving eukaryotic relationships

PLoS biology, 2021-08, Vol.19 (8), p.e3001365-e3001365

2021

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The evolution of endoparasitism and complex life cycles in parasitic platyhelminths

Current biology, 2023-10, Vol.33 (19), p.4269-4275.e3

2023

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There Is Treasure Everywhere: Reductive Plastid Evolution in Apicomplexa in Light of Their Close Relatives

Biomolecules (Basel, Switzerland), 2019-08, Vol.9 (8), p.378

2019

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Phylogenetic analyses of transcriptome data resolve familial assignments for genera of the red-algal Acrochaetiales-Palmariales Complex (Nemaliophycidae)

Molecular phylogenetics and evolution, 2018-02, Vol.119, p.151-159

2018

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Gregarine single-cell transcriptomics reveals differential mitochondrial remodeling and adaptation in apicomplexans

BMC biology, 2021-04, Vol.19 (1), p.77-77, Article 77

2021

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Single cell transcriptomics reveals UAR codon reassignment in Palmarella salina (Metopida, Armophorea) and confirms Armophorida belongs to APM clade

Molecular phylogenetics and evolution, 2024-02, Vol.191, p.107991-107991, Article 107991

2024

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Reconstruction of Plastid Proteomes of Apicomplexans and Close Relatives Reveals the Major Evolutionary Outcomes of Cryptic Plastids

Molecular biology and evolution, 2023-01, Vol.40 (1)

2023

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Anaeramoebae are a divergent lineage of eukaryotes that shed light on the transition from anaerobic mitochondria to hydrogenosomes

Current biology, 2021-12, Vol.31 (24), p.5605-5612.e5

2021

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Expanded gene and taxon sampling of diplomonads shows multiple switches to parasitic and free-living lifestyle

BMC biology, 2024-09, Vol.22 (1), p.217-18, Article 217

2024

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Molecular phylogenetics supports a clade of red algal parasites retaining native plastids: taxonomy and terminology revised

Journal of phycology, 2019-04, Vol.55 (2), p.279-288

2019

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Response to Preuss and Zuccarello (2020): biological definitions that can be unambiguously applied for red algal parasites

Journal of phycology, 2020-06, Vol.56 (3), p.833-835

2020

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Kelp transcriptomes provide robust support for interfamilial relationships and revision of the little known Arthrothamnaceae (Laminariales)

Journal of phycology, 2017-02, Vol.53 (1), p.1-6

2017

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ghost plastid of Choreocolax polysiphoniae

Journal of phycology, 2015-04, Vol.51 (2), p.217-221

2015

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Molecular and morphological evidence for Sheathia gen. nov. (Batrachospermales, Rhodophyta) and three new species

Journal of phycology, 2014-06, Vol.50 (3), p.526-542

2014

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Gene expression dynamics of natural assemblages of heterotrophic flagellates during bacterivory

Microbiome, 2023-06, Vol.11 (1), p.134-134, Article 134

2023

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Releasing uncurated datasets is essential for reproducible phylogenomics

Nature ecology & evolution, 2020-11, Vol.4 (11), p.1435-1437

2020

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Red Algal Mitochondrial Genomes Are More Complete than Previously Reported

Genome biology and evolution, 2017-01, Vol.9 (1), p.48-63

2017

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Chloroplast and mitochondrial genomes of Balbiania investiens (Balbianiales, Nemaliophycidae)

Phycologia (Oxford), 2019-05, Vol.58 (3), p.310-318

2019

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Global sampling reveals low genetic diversity within Compsopogon (Compsopogonales, Rhodophyta)

European journal of phycology, 2013-05, Vol.48 (2), p.152-162

2013

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A contaminant DNA barcode sequence reveals a new red algal order, Corynodactylales (Nemaliophycidae, Florideophyceae)

Botany, 2017-06, Vol.95 (6), p.561-566

2017

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Are all red algal parasites cut from the same cloth?

Acta Societatis Botanicorum Poloniae, 2014-01, Vol.83 (4), p.369-375

2014

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New Collections of Freshwater Red Algae (Batrachospermales, Rhodophyta) from Historically Important Areas in France

Cryptogamie. Algologie, 2014-08, Vol.35 (3), p.303-316

2014

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Genomics of New Ciliate Lineages Provides Insight into the Evolution of Obligate Anaerobiosis

Current biology, 2020-06, Vol.30 (11), p.2037-2050.e6

2020

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Molecular and morphological evidence for S heathia gen. nov. ( B atrachospermales, R hodophyta) and three new species

Journal of phycology, 2014-06, Vol.50 (3), p.526-542

2014

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Organellar Genome Evolution in Red Algal Parasites: Differences in Adelpho- and Alloparasites

Salomaki, Eric

2017

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PhyloFisher: A phylogenomic package for resolving eukaryotic relationships

The evolution of endoparasitism and complex life cycles in parasitic platyhelminths

There Is Treasure Everywhere: Reductive Plastid Evolution in Apicomplexa in Light of Their Close Relatives

Phylogenetic analyses of transcriptome data resolve familial assignments for genera of the red-algal Acrochaetiales-Palmariales Complex (Nemaliophycidae)

Gregarine single-cell transcriptomics reveals differential mitochondrial remodeling and adaptation in apicomplexans

Single cell transcriptomics reveals UAR codon reassignment in Palmarella salina (Metopida, Armophorea) and confirms Armophorida belongs to APM clade

Reconstruction of Plastid Proteomes of Apicomplexans and Close Relatives Reveals the Major Evolutionary Outcomes of Cryptic Plastids

Anaeramoebae are a divergent lineage of eukaryotes that shed light on the transition from anaerobic mitochondria to hydrogenosomes

Expanded gene and taxon sampling of diplomonads shows multiple switches to parasitic and free-living lifestyle

Molecular phylogenetics supports a clade of red algal parasites retaining native plastids: taxonomy and terminology revised

Response to Preuss and Zuccarello (2020): biological definitions that can be unambiguously applied for red algal parasites

Kelp transcriptomes provide robust support for interfamilial relationships and revision of the little known Arthrothamnaceae (Laminariales)

ghost plastid of Choreocolax polysiphoniae

Molecular and morphological evidence for Sheathia gen. nov. (Batrachospermales, Rhodophyta) and three new species

Gene expression dynamics of natural assemblages of heterotrophic flagellates during bacterivory

Releasing uncurated datasets is essential for reproducible phylogenomics

Red Algal Mitochondrial Genomes Are More Complete than Previously Reported

Chloroplast and mitochondrial genomes of Balbiania investiens (Balbianiales, Nemaliophycidae)

Global sampling reveals low genetic diversity within Compsopogon (Compsopogonales, Rhodophyta)

A contaminant DNA barcode sequence reveals a new red algal order, Corynodactylales (Nemaliophycidae, Florideophyceae)

Are all red algal parasites cut from the same cloth?

New Collections of Freshwater Red Algae (Batrachospermales, Rhodophyta) from Historically Important Areas in France

Genomics of New Ciliate Lineages Provides Insight into the Evolution of Obligate Anaerobiosis

Molecular and morphological evidence for S heathia gen. nov. ( B atrachospermales, R hodophyta) and three new species

Organellar Genome Evolution in Red Algal Parasites: Differences in Adelpho- and Alloparasites

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