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Construction of a three‐component regulatory network of transcribed ultraconserved regions for the identification of prognostic biomarkers in gastric cancer

Journal of cellular biochemistry, 2023-03, Vol.124 (3), p.396-408

2023

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Controllability in cancer metabolic networks according to drug targets as driver nodes

PloS one, 2013-11, Vol.8 (11), p.e79397-e79397

2013

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Impairment of DNA Methylation Maintenance Is the Main Cause of Global Demethylation in Naive Embryonic Stem Cells

Molecular cell, 2016-06, Vol.62 (6), p.848-861

2016

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CentiServer: A Comprehensive Resource, Web-Based Application and R Package for Centrality Analysis

PloS one, 2015-11, Vol.10 (11), p.e0143111-e0143111

2015

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Comprehensive functional enrichment analysis of male infertility

Scientific reports, 2017-11, Vol.7 (1), p.15778-14, Article 15778

2017

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Metabolic function-based normalization improves transcriptome data-driven reduction of genome-scale metabolic models

NPJ systems biology and applications, 2023-05, Vol.9 (1), p.15-15, Article 15

2023

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Evolution of Centrality Measurements for the Detection of Essential Proteins in Biological Networks

Frontiers in physiology, 2016-08, Vol.7, p.375-375

2016

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Computational Models for Clinical Applications in Personalized Medicine-Guidelines and Recommendations for Data Integration and Model Validation

Journal of personalized medicine, 2022-01, Vol.12 (2), p.166

2022

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Exploring the Metabolic Heterogeneity of Cancers: A Benchmark Study of Context-Specific Models

Journal of personalized medicine, 2021-06, Vol.11 (6), p.496

2021

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Computational analysis of reciprocal association of metabolism and epigenetics in the budding yeast: a genome-scale metabolic model (GSMM) approach

PloS one, 2014-11, Vol.9 (11), p.e111686-e111686

2014

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Omics Integration Analyses Reveal the Early Evolution of Malignancy in Breast Cancer

Cancers, 2020-06, Vol.12 (6), p.1460

2020

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HomoTarget: A new algorithm for prediction of microRNA targets in Homo sapiens

Genomics (San Diego, Calif.), 2013-02, Vol.101 (2), p.94-100

2013

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A Metabolic Model of Intestinal Secretions: The Link between Human Microbiota and Colorectal Cancer Progression

Metabolites, 2021-07, Vol.11 (7), p.456

2021

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Enzyme-Constrained Models and Omics Analysis of Streptomyces coelicolor Reveal Metabolic Changes that Enhance Heterologous Production

iScience, 2020-09, Vol.23 (9), p.101525-101525, Article 101525

2020

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Towards biomarkers for outcomes after pancreatic ductal adenocarcinoma and ischaemic stroke, with focus on (co)-morbidity and ageing/cellular senescence (SASKit): protocol for a prospective cohort study

BMJ open, 2020-12, Vol.10 (12), p.e039560-e039560

2020

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CytoKavosh: a cytoscape plug-in for finding network motifs in large biological networks

PloS one, 2012-08, Vol.7 (8), p.e43287-e43287

2012

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Computational analysis of RNA–protein interaction interfaces via the Voronoi diagram

Journal of theoretical biology, 2012-01, Vol.293 (21), p.55-64

2012

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Evaluation of crowdsourced mortality prediction models as a framework for assessing artificial intelligence in medicine

Journal of the American Medical Informatics Association : JAMIA, 2023-12, Vol.31 (1), p.35-44

2023

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A systematic survey of centrality measures for protein-protein interaction networks

BMC systems biology, 2018-07, Vol.12 (1), p.80-80, Article 80

2018

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Mechanical effects modulate drug resistance in MCF-7-derived organoids: Insights into the wnt/β-catenin pathway

Biochemical and biophysical research communications, 2024-02, Vol.695, p.149420-149420, Article 149420

2024

Volltextzugriff (PDF)

Alterations in cancer cell metabolism: The Warburg effect and metabolic adaptation

Genomics (San Diego, Calif.), 2015-05, Vol.105 (5-6), p.275-281

2015

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GEMtractor: extracting views into genome-scale metabolic models

Bioinformatics, 2020-05, Vol.36 (10), p.3281-3282

2020

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Unveiling network-based functional features through integration of gene expression into protein networks

Biochimica et biophysica acta. Molecular basis of disease, 2018-06, Vol.1864 (6), p.2349-2359

2018

Volltextzugriff (PDF)

Impairment of DNA Methylation Maintenance Is the Main Cause of Global Demethylation in Naive Embryonic Stem Cells

Molecular cell, 2016-06, Vol.62 (6), p.983-983

2016

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Cancerome: A hidden informative subnetwork of the diseasome

Computers in biology and medicine, 2016-09, Vol.76, p.173-177

2016

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Construction of a three‐component regulatory network of transcribed ultraconserved regions for the identification of prognostic biomarkers in gastric cancer

Controllability in cancer metabolic networks according to drug targets as driver nodes

Impairment of DNA Methylation Maintenance Is the Main Cause of Global Demethylation in Naive Embryonic Stem Cells

CentiServer: A Comprehensive Resource, Web-Based Application and R Package for Centrality Analysis

Comprehensive functional enrichment analysis of male infertility

Metabolic function-based normalization improves transcriptome data-driven reduction of genome-scale metabolic models

Evolution of Centrality Measurements for the Detection of Essential Proteins in Biological Networks

Computational Models for Clinical Applications in Personalized Medicine-Guidelines and Recommendations for Data Integration and Model Validation

Exploring the Metabolic Heterogeneity of Cancers: A Benchmark Study of Context-Specific Models

Computational analysis of reciprocal association of metabolism and epigenetics in the budding yeast: a genome-scale metabolic model (GSMM) approach

Omics Integration Analyses Reveal the Early Evolution of Malignancy in Breast Cancer

HomoTarget: A new algorithm for prediction of microRNA targets in Homo sapiens

A Metabolic Model of Intestinal Secretions: The Link between Human Microbiota and Colorectal Cancer Progression

Enzyme-Constrained Models and Omics Analysis of Streptomyces coelicolor Reveal Metabolic Changes that Enhance Heterologous Production

Towards biomarkers for outcomes after pancreatic ductal adenocarcinoma and ischaemic stroke, with focus on (co)-morbidity and ageing/cellular senescence (SASKit): protocol for a prospective cohort study

CytoKavosh: a cytoscape plug-in for finding network motifs in large biological networks

Computational analysis of RNA–protein interaction interfaces via the Voronoi diagram

Evaluation of crowdsourced mortality prediction models as a framework for assessing artificial intelligence in medicine

A systematic survey of centrality measures for protein-protein interaction networks

Mechanical effects modulate drug resistance in MCF-7-derived organoids: Insights into the wnt/β-catenin pathway

Alterations in cancer cell metabolism: The Warburg effect and metabolic adaptation

GEMtractor: extracting views into genome-scale metabolic models

Unveiling network-based functional features through integration of gene expression into protein networks

Impairment of DNA Methylation Maintenance Is the Main Cause of Global Demethylation in Naive Embryonic Stem Cells

Cancerome: A hidden informative subnetwork of the diseasome

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