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An optimized library for reference-based deconvolution of whole-blood biospecimens assayed using the Illumina HumanMethylationEPIC BeadArray

Genome Biology, 2018-05, Vol.19 (1), p.64-64, Article 64

2018

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Cell-type deconvolution from DNA methylation: a review of recent applications

Human molecular genetics, 2017-10, Vol.26 (R2), p.R216-R224

2017

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Enhanced cell deconvolution of peripheral blood using DNA methylation for high-resolution immune profiling

Nature communications, 2022-02, Vol.13 (1), p.761-761, Article 761

2022

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MethylNet: an automated and modular deep learning approach for DNA methylation analysis

BMC bioinformatics, 2020-03, Vol.21 (1), p.108-15, Article 108

2020

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Detailed immune profiling in pediatric Crohn's disease using methylation cytometry

Epigenetics, 2024-12, Vol.19 (1), p.2289786-2289786

2024

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Associations in cell type-specific hydroxymethylation and transcriptional alterations of pediatric central nervous system tumors

Nature communications, 2024-04, Vol.15 (1), p.3635-3635, Article 3635

2024

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Systematic evaluation and validation of reference and library selection methods for deconvolution of cord blood DNA methylation data

Clinical epigenetics, 2019-08, Vol.11 (1), p.125, Article 125

2019

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HiTIMED: hierarchical tumor immune microenvironment epigenetic deconvolution for accurate cell type resolution in the tumor microenvironment using tumor-type-specific DNA methylation data

Journal of translational medicine, 2022-11, Vol.20 (1), p.516-516, Article 516

2022

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Tumor microenvironment deconvolution identifies cell-type-independent aberrant DNA methylation and gene expression in prostate cancer

Clinical epigenetics, 2024-01, Vol.16 (1), p.5-5, Article 5

2024

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DNA methylation as a pharmacodynamic marker of glucocorticoid response and glioma survival

Nature communications, 2022-09, Vol.13 (1), p.1-16, Article 5505

2022

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Overview of Disinfection By-products and Associated Health Effects

Current environmental health reports, 2015-03, Vol.2 (1), p.107-115

2015

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Maternal swimming pool exposure during pregnancy in relation to birth outcomes and cord blood DNA methylation among private well users

Environment international, 2019-02, Vol.123, p.459-466

2019

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Hierarchical deconvolution for extensive cell type resolution in the human brain using DNA methylation

Frontiers in neuroscience, 2023-06, Vol.17, p.1198243-1198243

2023

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Identification of a foetal epigenetic compartment in adult human kidney

Epigenetics, 2022-03, Vol.17 (3), p.335-355

2022

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Assessment of emerging pretraining strategies in interpretable multimodal deep learning for cancer prognostication

BioData mining, 2023-07, Vol.16 (1), p.23-23, Article 23

2023

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Enrichment of CpG island shore region hypermethylation in epigenetic breast field cancerization

Epigenetics, 2020-10, Vol.15 (10), p.1093-1106

2020

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Immunological shifts during early-stage Parkinson's disease identified with DNA methylation data on longitudinally collected blood samples

NPJ Parkinson's Disease, 2024-01, Vol.10 (1), p.21-21, Article 21

2024

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Absence of an embryonic stem cell DNA methylation signature in human cancer

BMC cancer, 2019-07, Vol.19 (1), p.711-711, Article 711

2019

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Down Syndrome Altered Cell Composition in Blood, Brain, and Buccal Swab Samples Profiled by DNA-Methylation-Based Cell-Type Deconvolution

Cells (Basel, Switzerland), 2023-04, Vol.12 (8), p.1168

2023

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Molecular and epigenetic profiles of BRCA1-like hormone-receptor-positive breast tumors identified with development and application of a copy-number-based classifier

Breast cancer research : BCR, 2019-01, Vol.21 (1), p.14-14, Article 14

2019

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Assessment of immune cell profiles among post-menopausal women in the Women's Health Initiative using DNA methylation-based methods

Clinical epigenetics, 2023-04, Vol.15 (1), p.69-69, Article 69

2023

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A Novel Framework for the Identification of Reference DNA Methylation Libraries for Reference-Based Deconvolution of Cellular Mixtures

Frontiers in bioinformatics, 2022, Vol.2

2022

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Integrative epigenetic and genetic pan-cancer somatic alteration portraits

Epigenetics, 2017-07, Vol.12 (7), p.561-574

2017

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MethylMasteR: A Comparison and Customization of Methylation-Based Copy Number Variation Calling Software in Cancers Harboring Large Scale Chromosomal Deletions

Frontiers in bioinformatics, 2022, Vol.2

2022

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Newborn and childhood differential DNA methylation and liver fat in school-age children

Clinical epigenetics, 2019-12, Vol.12 (1), p.3-3, Article 3

2019

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An optimized library for reference-based deconvolution of whole-blood biospecimens assayed using the Illumina HumanMethylationEPIC BeadArray

Cell-type deconvolution from DNA methylation: a review of recent applications

Enhanced cell deconvolution of peripheral blood using DNA methylation for high-resolution immune profiling

MethylNet: an automated and modular deep learning approach for DNA methylation analysis

Detailed immune profiling in pediatric Crohn's disease using methylation cytometry

Associations in cell type-specific hydroxymethylation and transcriptional alterations of pediatric central nervous system tumors

Systematic evaluation and validation of reference and library selection methods for deconvolution of cord blood DNA methylation data

HiTIMED: hierarchical tumor immune microenvironment epigenetic deconvolution for accurate cell type resolution in the tumor microenvironment using tumor-type-specific DNA methylation data

Tumor microenvironment deconvolution identifies cell-type-independent aberrant DNA methylation and gene expression in prostate cancer

DNA methylation as a pharmacodynamic marker of glucocorticoid response and glioma survival

Overview of Disinfection By-products and Associated Health Effects

Maternal swimming pool exposure during pregnancy in relation to birth outcomes and cord blood DNA methylation among private well users

Hierarchical deconvolution for extensive cell type resolution in the human brain using DNA methylation

Identification of a foetal epigenetic compartment in adult human kidney

Assessment of emerging pretraining strategies in interpretable multimodal deep learning for cancer prognostication

Enrichment of CpG island shore region hypermethylation in epigenetic breast field cancerization

Immunological shifts during early-stage Parkinson's disease identified with DNA methylation data on longitudinally collected blood samples

Absence of an embryonic stem cell DNA methylation signature in human cancer

Down Syndrome Altered Cell Composition in Blood, Brain, and Buccal Swab Samples Profiled by DNA-Methylation-Based Cell-Type Deconvolution

Molecular and epigenetic profiles of BRCA1-like hormone-receptor-positive breast tumors identified with development and application of a copy-number-based classifier

Assessment of immune cell profiles among post-menopausal women in the Women's Health Initiative using DNA methylation-based methods

A Novel Framework for the Identification of Reference DNA Methylation Libraries for Reference-Based Deconvolution of Cellular Mixtures

Integrative epigenetic and genetic pan-cancer somatic alteration portraits

MethylMasteR: A Comparison and Customization of Methylation-Based Copy Number Variation Calling Software in Cancers Harboring Large Scale Chromosomal Deletions

Newborn and childhood differential DNA methylation and liver fat in school-age children

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