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Benchmarking machine learning robustness in Covid-19 genome sequence classification

Scientific reports, 2023-03, Vol.13 (1), p.4154-4154, Article 4154

2023

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Combined HER3-EGFR score in triple-negative breast cancer provides prognostic and predictive significance superior to individual biomarkers

Scientific reports, 2020-02, Vol.10 (1), p.3009, Article 3009

2020

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ERBB2 and KRAS alterations mediate response to EGFR inhibitors in early stage gallbladder cancer

International journal of cancer, 2019-04, Vol.144 (8), p.2008-2019

2019

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Identifying cancer driver genes from functional genomics screens

Swiss medical weekly, 2020-02, Vol.150, p.w20195

2020

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Assessing the Resilience of Machine Learning Classification Algorithms on SARS-CoV-2 Genome Sequences Generated with Long-Read Specific Errors

Biomolecules (Basel, Switzerland), 2023-06, Vol.13 (6), p.934

2023

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Identifying Biomarkers Using Support Vector Machine to Understand the Racial Disparity in Triple-Negative Breast Cancer

Journal of computational biology, 2023-04, Vol.30 (4), p.502-517

2023

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Efficient Approximate Kernel Based Spike Sequence Classification

IEEE/ACM transactions on computational biology and bioinformatics, 2023-11, Vol.20 (6), p.1-12

2023

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From Alpha to Zeta: Identifying Variants and Subtypes of SARS-CoV-2 Via Clustering

Journal of computational biology, 2021-11, Vol.28 (11), p.1113-1129

2021

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Deciphering the Diversity of Somatic Alterations and Salmonella Infection in Gallbladder Cancer by Whole Exome Sequencing

Canadian Journal of Biotechnology, 2017-10, Vol.1 (Special Issue), p.73-73

2017

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A k-mer Based Approach for SARS-CoV-2 Variant Identification

Bioinformatics Research and Applications, p.153-164

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Sensory Nerves inhibit the development of protective anti-melanoma immune response and formation of tertiary lymphoid structures

The Journal of immunology (1950), 2023-05, Vol.210 (1_Supplement), p.172-172.09

2023

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The persisting puzzle of racial disparity in triple negative breast cancer: looking through a new lens

Frontiers in bioscience (Scholar edition), 2019-03, Vol.11 (1), p.75-88, Article 527

2019

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Pipeline for Analyzing Activity of Metabolic Pathways in Planktonic Communities Using Metatranscriptomic Data

Journal of computational biology, 2021-08, Vol.28 (8), p.842-855

2021

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Deep Learning Reveals Biological Basis of Racial Disparities in Quadruple-Negative Breast Cancer

Bioinformatics Research and Applications, 2023, Vol.14248, p.498-508

2023

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Molecular profiling and quantitative image analysis reveal spatial intratumor heterogeneity in TNBC

Journal of clinical oncology, 2020-05, Vol.38 (15_suppl), p.e12536-e12536

2020

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Abstract C026: Lack of HER4 signaling predicts poor prognosis among triple-negative breast cancer patients of African descent: A multi-institutional study

Cancer epidemiology, biomarkers & prevention, 2020-06, Vol.29 (6_Supplement_1), p.C026-C026

2020

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An SVM Based Approach to Study the Racial Disparity in Triple-Negative Breast Cancer

Computational Advances in Bio and Medical Sciences, p.163-175

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Exploring Racial Disparities in Triple-Negative Breast Cancer: Insights from Feature Selection Algorithms

Bioinformatics Research and Applications, 2023, Vol.14248, p.487-497

2023

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Clustering Based Identification of SARS-CoV-2 Subtypes

Computational Advances in Bio and Medical Sciences, p.127-141

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Sensory Nerves Impede the Formation of Tertiary Lymphoid Structures and Development of Protective Antimelanoma Immune Responses

Cancer immunology research, 2022-09, Vol.10 (9), p.1141-1154

2022

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Sensory nerves impede the formation of tertiary lymphoid structures and development of protective anti-melanoma immune responses

Cancer immunology research, 2022-09, Vol.10 (9), p.1141-1154

2022

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Abstract 4397: Deciphering the diversity of somatic alterations and Salmonella infection in gallbladder cancer by whole exome sequencing

Cancer research (Chicago, Ill.), 2017-07, Vol.77 (13_Supplement), p.4397-4397

2017

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Non-typhoidal Salmonella DNA traces in gallbladder cancer

Infectious agents and cancer, 2016-03, Vol.11 (12), p.12, Article 12

2016

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Revisiting the stratigraphy of the Mesoproterozoic Chhattisgarh Supergroup, Bastar craton, India based on subsurface lithoinformation

Journal of Earth System Science, 2014-04, Vol.123 (3), p.617-632

2014

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TMC-SNPdb: an Indian germline variant database derived from whole exome sequences

Database : the journal of biological databases and curation, 2016, Vol.2016, p.baw104

2016

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Benchmarking machine learning robustness in Covid-19 genome sequence classification

Combined HER3-EGFR score in triple-negative breast cancer provides prognostic and predictive significance superior to individual biomarkers

ERBB2 and KRAS alterations mediate response to EGFR inhibitors in early stage gallbladder cancer

Identifying cancer driver genes from functional genomics screens

Assessing the Resilience of Machine Learning Classification Algorithms on SARS-CoV-2 Genome Sequences Generated with Long-Read Specific Errors

Identifying Biomarkers Using Support Vector Machine to Understand the Racial Disparity in Triple-Negative Breast Cancer

Efficient Approximate Kernel Based Spike Sequence Classification

From Alpha to Zeta: Identifying Variants and Subtypes of SARS-CoV-2 Via Clustering

Deciphering the Diversity of Somatic Alterations and Salmonella Infection in Gallbladder Cancer by Whole Exome Sequencing

A k-mer Based Approach for SARS-CoV-2 Variant Identification

Sensory Nerves inhibit the development of protective anti-melanoma immune response and formation of tertiary lymphoid structures

The persisting puzzle of racial disparity in triple negative breast cancer: looking through a new lens

Pipeline for Analyzing Activity of Metabolic Pathways in Planktonic Communities Using Metatranscriptomic Data

Deep Learning Reveals Biological Basis of Racial Disparities in Quadruple-Negative Breast Cancer

Molecular profiling and quantitative image analysis reveal spatial intratumor heterogeneity in TNBC

Abstract C026: Lack of HER4 signaling predicts poor prognosis among triple-negative breast cancer patients of African descent: A multi-institutional study

An SVM Based Approach to Study the Racial Disparity in Triple-Negative Breast Cancer

Exploring Racial Disparities in Triple-Negative Breast Cancer: Insights from Feature Selection Algorithms

Clustering Based Identification of SARS-CoV-2 Subtypes

Sensory Nerves Impede the Formation of Tertiary Lymphoid Structures and Development of Protective Antimelanoma Immune Responses

Sensory nerves impede the formation of tertiary lymphoid structures and development of protective anti-melanoma immune responses

Abstract 4397: Deciphering the diversity of somatic alterations and Salmonella infection in gallbladder cancer by whole exome sequencing

Non-typhoidal Salmonella DNA traces in gallbladder cancer

Revisiting the stratigraphy of the Mesoproterozoic Chhattisgarh Supergroup, Bastar craton, India based on subsurface lithoinformation

TMC-SNPdb: an Indian germline variant database derived from whole exome sequences

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