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Paralogs are revealed by proportion of heterozygotes and deviations in read ratios in genotyping‐by‐sequencing data from natural populations

Molecular ecology resources, 2017-07, Vol.17 (4), p.656-669

2017

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empirical comparison of SNPs and microsatellites for parentage and kinship assignment in a wild sockeye salmon (Oncorhynchus nerka) population

Molecular ecology resources, 2011-03, Vol.11 (s1), p.150-161

2011

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Genomic islands of divergence linked to ecotypic variation in sockeye salmon

Molecular ecology, 2017-01, Vol.26 (2), p.554-570

2017

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Genotyping by sequencing resolves shallow population structure to inform conservation of Chinook salmon (Oncorhynchus tshawytscha)

Evolutionary applications, 2014-03, Vol.7 (3), p.355-369

2014

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Network Analysis of Linkage Disequilibrium Reveals Genome Architecture in Chum Salmon

G3 : genes - genomes - genetics, 2020-05, Vol.10 (5), p.1553-1561

2020

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The pink salmon genome: Uncovering the genomic consequences of a two-year life cycle

PloS one, 2021-12, Vol.16 (12), p.e0255752-e0255752

2021

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Y‐chromosome haplotypes are associated with variation in size and age at maturity in male Chinook salmon

Evolutionary applications, 2020-12, Vol.13 (10), p.2791-2806

2020

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Identification of Multiple QTL Hotspots in Sockeye Salmon (Oncorhynchus nerka) Using Genotyping-by-Sequencing and a Dense Linkage Map

The Journal of heredity, 2016-03, Vol.107 (2), p.122-133

2016

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Recombination patterns reveal information about centromere location on linkage maps

Molecular ecology resources, 2016-05, Vol.16 (3), p.655-661

2016

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Rank and order: evaluating the performance of SNPs for individual assignment in a non-model organism

PloS one, 2012-11, Vol.7 (11), p.e49018-e49018

2012

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Temporally isolated lineages of pink salmon reveal unique signatures of selection on distinct pools of standing genetic variation

The Journal of heredity, 2014-11, Vol.105 (6), p.741-845

2014

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Development of genomic resources for Pacific Herring through targeted transcriptome pyrosequencing

PloS one, 2012-02, Vol.7 (2), p.e30908

2012

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Use of sequence data from rainbow trout and Atlantic salmon for SNP detection in Pacific salmon

Molecular ecology, 2005-11, Vol.14 (13), p.4193-4203

2005

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Single nucleotide polymorphisms unravel hierarchical divergence and signatures of selection among Alaskan sockeye salmon (Oncorhynchus nerka) populations

BMC evolutionary biology, 2011-02, Vol.11, p.48

2011

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Transforming ecology and conservation biology through genome editing

Conservation biology, 2020-02, Vol.34 (1), p.54-65

2020

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Multiplex preamplification PCR and microsatellite validation enables accurate single nucleotide polymorphism genotyping of historical fish scales

Molecular ecology resources, 2011-03, Vol.11 (s1), p.268-277

2011

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RADseq provides unprecedented insights into molecular ecology and evolutionary genetics: comment on Breaking RAD by Lowry et al. (2016)

Molecular ecology resources, 2017-05, Vol.17 (3), p.356-361

2017

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Temporal Genetic Variance and Propagule-Driven Genetic Structure Characterize Naturalized Rainbow Trout (Oncorhynchus mykiss) from a Patagonian Lake Impacted by Trout Farming

PloS one, 2015-11, Vol.10 (11), p.e0142040-e0142040

2015

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Genetic differentiation of Alaska Chinook salmon: the missing link for migratory studies

Molecular ecology resources, 2011-03, Vol.11 (s1), p.226-246

2011

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Genetic Structure and Diversity of Japanese Chum Salmon Populations Inferred from Single-Nucleotide Polymorphism Markers

Transactions of the American Fisheries Society (1900), 2014-09, Vol.143 (5), p.1231-1246

2014

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Retention of a chromosomal inversion from an anadromous ancestor provides the genetic basis for alternative freshwater ecotypes in rainbow trout

Molecular ecology, 2019-03, Vol.28 (6), p.1412-1427

2019

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How stock of origin affects performance of individuals across a meta-ecosystem: an example from sockeye salmon

PloS one, 2013-03, Vol.8 (3), p.e58584-e58584

2013

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Effects of crossovers between homeologs on inheritance and population genomics in polyploid-derived salmonid fishes

The Journal of heredity, 2015-05, Vol.106 (3), p.217-227

2015

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Sorting duplicated loci disentangles complexities of polyploid genomes masked by genotyping by sequencing

Molecular ecology, 2016-05, Vol.25 (10), p.2117-2129

2016

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Contrasting genetic metrics and patterns among naturalized rainbow trout (Oncorhynchus mykiss) in two Patagonian lakes differentially impacted by trout aquaculture

Ecology and evolution, 2018-01, Vol.8 (1), p.273-285

2018

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Paralogs are revealed by proportion of heterozygotes and deviations in read ratios in genotyping‐by‐sequencing data from natural populations

empirical comparison of SNPs and microsatellites for parentage and kinship assignment in a wild sockeye salmon (Oncorhynchus nerka) population

Genomic islands of divergence linked to ecotypic variation in sockeye salmon

Genotyping by sequencing resolves shallow population structure to inform conservation of Chinook salmon (Oncorhynchus tshawytscha)

Network Analysis of Linkage Disequilibrium Reveals Genome Architecture in Chum Salmon

The pink salmon genome: Uncovering the genomic consequences of a two-year life cycle

Y‐chromosome haplotypes are associated with variation in size and age at maturity in male Chinook salmon

Identification of Multiple QTL Hotspots in Sockeye Salmon (Oncorhynchus nerka) Using Genotyping-by-Sequencing and a Dense Linkage Map

Recombination patterns reveal information about centromere location on linkage maps

Rank and order: evaluating the performance of SNPs for individual assignment in a non-model organism

Temporally isolated lineages of pink salmon reveal unique signatures of selection on distinct pools of standing genetic variation

Development of genomic resources for Pacific Herring through targeted transcriptome pyrosequencing

Use of sequence data from rainbow trout and Atlantic salmon for SNP detection in Pacific salmon

Single nucleotide polymorphisms unravel hierarchical divergence and signatures of selection among Alaskan sockeye salmon (Oncorhynchus nerka) populations

Transforming ecology and conservation biology through genome editing

Multiplex preamplification PCR and microsatellite validation enables accurate single nucleotide polymorphism genotyping of historical fish scales

RADseq provides unprecedented insights into molecular ecology and evolutionary genetics: comment on Breaking RAD by Lowry et al. (2016)

Temporal Genetic Variance and Propagule-Driven Genetic Structure Characterize Naturalized Rainbow Trout (Oncorhynchus mykiss) from a Patagonian Lake Impacted by Trout Farming

Genetic differentiation of Alaska Chinook salmon: the missing link for migratory studies

Genetic Structure and Diversity of Japanese Chum Salmon Populations Inferred from Single-Nucleotide Polymorphism Markers

Retention of a chromosomal inversion from an anadromous ancestor provides the genetic basis for alternative freshwater ecotypes in rainbow trout

How stock of origin affects performance of individuals across a meta-ecosystem: an example from sockeye salmon

Effects of crossovers between homeologs on inheritance and population genomics in polyploid-derived salmonid fishes

Sorting duplicated loci disentangles complexities of polyploid genomes masked by genotyping by sequencing

Contrasting genetic metrics and patterns among naturalized rainbow trout (Oncorhynchus mykiss) in two Patagonian lakes differentially impacted by trout aquaculture

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