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Using TESS to Predict Transcription Factor Binding Sites in DNA Sequence

Current Protocols in Bioinformatics, 2008-03, Vol.21 (1), p.2.6.1-2.6.15

Schug, Jonathan

2008

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Foxa1 and Foxa2 Are Essential for Sexual Dimorphism in Liver Cancer

Cell, 2012-01, Vol.148 (1-2), p.72-83

2012

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Single-Cell Transcriptomics of the Human Endocrine Pancreas

Diabetes (New York, N.Y.), 2016-10, Vol.65 (10), p.3028-3038

2016

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Human islets contain four distinct subtypes of β cells

Nature communications, 2016-07, Vol.7 (1), p.11756-11756, Article 11756

2016

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Multiplexed In Situ Imaging Mass Cytometry Analysis of the Human Endocrine Pancreas and Immune System in Type 1 Diabetes

Cell metabolism, 2019-03, Vol.29 (3), p.769-783.e4

2019

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Integration of ATAC-seq and RNA-seq identifies human alpha cell and beta cell signature genes

Molecular metabolism (Germany), 2016-03, Vol.5 (3), p.233-244

2016

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Epigenetic Regulation of the DLK1-MEG3 MicroRNA Cluster in Human Type 2 Diabetic Islets

Cell metabolism, 2014-01, Vol.19 (1), p.135-145

2014

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DNA methylation is required for the control of stem cell differentiation in the small intestine

Genes & development, 2014-03, Vol.28 (6), p.652-664

2014

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miRNA142-3p targets Tet2 and impairs Treg differentiation and stability in models of type 1 diabetes

Nature communications, 2019-12, Vol.10 (1), p.5697-15, Article 5697

2019

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MicroRNAs Control Intestinal Epithelial Differentiation, Architecture, and Barrier Function

Gastroenterology (New York, N.Y. 1943), 2010-11, Vol.139 (5), p.1654-1664.e1

2010

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Foxa2 and H2A.Z Mediate Nucleosome Depletion during Embryonic Stem Cell Differentiation

Cell, 2012-12, Vol.151 (7), p.1608-1616

2012

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Histone deacetylase 3 is an epigenomic brake in macrophage alternative activation

Genes & development, 2011-12, Vol.25 (23), p.2480-2488

2011

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Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM)

Bioinformatics, 2011-09, Vol.27 (18), p.2518-2528

2011

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Dnmt1 is essential to maintain progenitors in the perinatal intestinal epithelium

Development (Cambridge), 2015-06, Vol.142 (12), p.2163-2172

2015

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Dynamic Chromatin Remodeling Mediated by Polycomb Proteins Orchestrates Pancreatic Differentiation of Human Embryonic Stem Cells

Cell stem cell, 2013-02, Vol.12 (2), p.224-237

2013

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Genome-wide analysis reveals conserved and divergent features of Notch1/RBPJ binding in human and murine T-lymphoblastic leukemia cells

Proceedings of the National Academy of Sciences - PNAS, 2011-09, Vol.108 (36), p.14908-14913

2011

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Prospective isolation of a bipotential clonogenic liver progenitor cell in adult mice

Genes & development, 2011-06, Vol.25 (11), p.1193-1203

2011

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Single-cell analysis of the human pancreas in type 2 diabetes using multi-spectral imaging mass cytometry

Cell reports (Cambridge), 2021-11, Vol.37 (5), p.109919-109919, Article 109919

2021

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Propagation of adipogenic signals through an epigenomic transition state

Genes & development, 2010-05, Vol.24 (10), p.1035-1044

2010

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A comparison of Illumina and Ion Torrent sequencing platforms in the context of differential gene expression

BMC genomics, 2017-08, Vol.18 (1), p.602-602, Article 602

2017

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Reprogramming human gallbladder cells into insulin-producing β-like cells

PloS one, 2017-08, Vol.12 (8), p.e0181812-e0181812

2017

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Long-range enhancer activity determines Myc sensitivity to Notch inhibitors in T cell leukemia

Proceedings of the National Academy of Sciences - PNAS, 2014-11, Vol.111 (46), p.E4946-E4953

2014

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Single-cell transcriptomics of human islet ontogeny defines the molecular basis of β-cell dedifferentiation in T2D

Molecular metabolism (Germany), 2020-12, Vol.42, p.101057-101057, Article 101057

2020

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Diurnal retinal and choroidal gene expression patterns support a role for circadian biology in myopia pathogenesis

Scientific reports, 2024-01, Vol.14 (1), p.533-533, Article 533

2024

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Inherited mutations in the helicase RTEL1 cause telomere dysfunction and Hoyeraal-Hreidarsson syndrome

Proceedings of the National Academy of Sciences - PNAS, 2013-09, Vol.110 (36), p.14518-14518

2013

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Using TESS to Predict Transcription Factor Binding Sites in DNA Sequence

Foxa1 and Foxa2 Are Essential for Sexual Dimorphism in Liver Cancer

Single-Cell Transcriptomics of the Human Endocrine Pancreas

Human islets contain four distinct subtypes of β cells

Multiplexed In Situ Imaging Mass Cytometry Analysis of the Human Endocrine Pancreas and Immune System in Type 1 Diabetes

Integration of ATAC-seq and RNA-seq identifies human alpha cell and beta cell signature genes

Epigenetic Regulation of the DLK1-MEG3 MicroRNA Cluster in Human Type 2 Diabetic Islets

DNA methylation is required for the control of stem cell differentiation in the small intestine

miRNA142-3p targets Tet2 and impairs Treg differentiation and stability in models of type 1 diabetes

MicroRNAs Control Intestinal Epithelial Differentiation, Architecture, and Barrier Function

Foxa2 and H2A.Z Mediate Nucleosome Depletion during Embryonic Stem Cell Differentiation

Histone deacetylase 3 is an epigenomic brake in macrophage alternative activation

Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM)

Dnmt1 is essential to maintain progenitors in the perinatal intestinal epithelium

Dynamic Chromatin Remodeling Mediated by Polycomb Proteins Orchestrates Pancreatic Differentiation of Human Embryonic Stem Cells

Genome-wide analysis reveals conserved and divergent features of Notch1/RBPJ binding in human and murine T-lymphoblastic leukemia cells

Prospective isolation of a bipotential clonogenic liver progenitor cell in adult mice

Single-cell analysis of the human pancreas in type 2 diabetes using multi-spectral imaging mass cytometry

Propagation of adipogenic signals through an epigenomic transition state

A comparison of Illumina and Ion Torrent sequencing platforms in the context of differential gene expression

Reprogramming human gallbladder cells into insulin-producing β-like cells

Long-range enhancer activity determines Myc sensitivity to Notch inhibitors in T cell leukemia

Single-cell transcriptomics of human islet ontogeny defines the molecular basis of β-cell dedifferentiation in T2D

Diurnal retinal and choroidal gene expression patterns support a role for circadian biology in myopia pathogenesis

Inherited mutations in the helicase RTEL1 cause telomere dysfunction and Hoyeraal-Hreidarsson syndrome

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