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PrognoScan: a new database for meta-analysis of the prognostic value of genes

BMC medical genomics, 2009-04, Vol.2 (1), p.18-18, Article 18

2009

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PSSM-based prediction of DNA binding sites in proteins

BMC bioinformatics, 2005-02, Vol.6 (1), p.33-33, Article 33

2005

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Identification of Genes Upregulated in ALK-Positive and EGFR/KRAS/ALK-Negative Lung Adenocarcinomas

Cancer research (Chicago, Ill.), 2012, Vol.72 (1), p.100-111

2012

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ASAView: database and tool for solvent accessibility representation in proteins

BMC bioinformatics, 2004-05, Vol.5 (1), p.51-51, Article 51

2004

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Protein-DNA interactions: structural, thermodynamic and clustering patterns of conserved residues in DNA-binding proteins

Nucleic acids research, 2008-10, Vol.36 (18), p.5922-5932

2008

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Genetic algorithm optimization in drug design QSAR: Bayesian-regularized genetic neural networks (BRGNN) and genetic algorithm-optimized support vectors machines (GA-SVM)

Molecular diversity, 2011-02, Vol.15 (1), p.269-289

2011

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Moment-based prediction of DNA-binding proteins

Journal of molecular biology, 2004-07, Vol.341 (1), p.65-71

2004

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A new method for evaluating the specificity of indirect readout in protein-DNA recognition

Nucleic acids research, 2012-09, Vol.40 (17), p.e129-e129

2012

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Prediction of dinucleotide-specific RNA-binding sites in proteins

BMC bioinformatics, 2011-11, Vol.12 Suppl 13 (Suppl 13), p.S5-S5, Article S5

2011

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Real value prediction of solvent accessibility from amino acid sequence

Proteins, structure, function, and bioinformatics, 2003-03, Vol.50 (4), p.629-635

2003

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NF-E2 p45 Is Important for Establishing Normal Function of Platelets

Molecular and Cellular Biology, 2013-07, Vol.33 (14), p.2659-2670

2013

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Analysis of electric moments of RNA-binding proteins: implications for mechanism and prediction

BMC structural biology, 2011-02, Vol.11 (1), p.8-8

2011

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A signature-based method for indexing cell cycle phase distribution from microarray profiles

BMC genomics, 2009-03, Vol.10 (137), p.137-137

2009

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Unique Mode of GCC Box Recognition by the DNA-binding Domain of Ethylene-responsive Element-binding Factor (ERF Domain) in Plant

The Journal of biological chemistry, 1998-10, Vol.273 (41), p.26857-26861

1998

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Structure-based prediction of DNA target sites by regulatory proteins

Proteins, structure, function, and bioinformatics, 1999-04, Vol.35 (1), p.114-131

1999

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uORFs, reinitiation and alternative translation start sites in human mRNAs

FEBS letters, 2008-04, Vol.582 (9), p.1293-1297

2008

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AUG_hairpin: prediction of a downstream secondary structure influencing the recognition of a translation start site

BMC bioinformatics, 2007-08, Vol.8 (1), p.318-318, Article 318

2007

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Prediction of mono- and di-nucleotide-specific DNA-binding sites in proteins using neural networks

BMC structural biology, 2009-05, Vol.9 (30), p.30-30, Article 30

2009

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Intermolecular and Intramolecular Readout Mechanisms in Protein–DNA Recognition

Journal of molecular biology, 2004-03, Vol.337 (2), p.285-294

2004

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Important amino acid properties for enhanced thermostability from mesophilic to thermophilic proteins

Biophysical chemistry, 1999-11, Vol.82 (1), p.51-67

1999

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Determinants in the Sequence Specific Binding of Two Plant Transcription Factors, CBF1 and NtERF2, to the DRE and GCC Motifs

Biochemistry (Easton), 2002-04, Vol.41 (13), p.4202-4208

2002

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Specificity of Protein–DNA Recognition Revealed by Structure-based Potentials: Symmetric/Asymmetric and Cognate/Non-cognate Binding

Journal of molecular biology, 2002-10, Vol.322 (5), p.907-915

2002

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Sequence-Dependent Conformational Energy of DNA Derived from Molecular Dynamics Simulations: Toward Understanding the Indirect Readout Mechanism in Protein−DNA Recognition

Journal of the American Chemical Society, 2005-11, Vol.127 (46), p.16074-16089

2005

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Genetic reclassification of porcine enteroviruses

Journal of general virology, 2001-02, Vol.82 (2), p.417-424

2001

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Classification of Protein-DNA Complexes Based on Structural Descriptors

Structure (London), 2006-09, Vol.14 (9), p.1355-1367

2006

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PrognoScan: a new database for meta-analysis of the prognostic value of genes

PSSM-based prediction of DNA binding sites in proteins

Identification of Genes Upregulated in ALK-Positive and EGFR/KRAS/ALK-Negative Lung Adenocarcinomas

ASAView: database and tool for solvent accessibility representation in proteins

Protein-DNA interactions: structural, thermodynamic and clustering patterns of conserved residues in DNA-binding proteins

Genetic algorithm optimization in drug design QSAR: Bayesian-regularized genetic neural networks (BRGNN) and genetic algorithm-optimized support vectors machines (GA-SVM)

Moment-based prediction of DNA-binding proteins

A new method for evaluating the specificity of indirect readout in protein-DNA recognition

Prediction of dinucleotide-specific RNA-binding sites in proteins

Real value prediction of solvent accessibility from amino acid sequence

NF-E2 p45 Is Important for Establishing Normal Function of Platelets

Analysis of electric moments of RNA-binding proteins: implications for mechanism and prediction

A signature-based method for indexing cell cycle phase distribution from microarray profiles

Unique Mode of GCC Box Recognition by the DNA-binding Domain of Ethylene-responsive Element-binding Factor (ERF Domain) in Plant

Structure-based prediction of DNA target sites by regulatory proteins

uORFs, reinitiation and alternative translation start sites in human mRNAs

AUG_hairpin: prediction of a downstream secondary structure influencing the recognition of a translation start site

Prediction of mono- and di-nucleotide-specific DNA-binding sites in proteins using neural networks

Intermolecular and Intramolecular Readout Mechanisms in Protein–DNA Recognition

Important amino acid properties for enhanced thermostability from mesophilic to thermophilic proteins

Determinants in the Sequence Specific Binding of Two Plant Transcription Factors, CBF1 and NtERF2, to the DRE and GCC Motifs

Specificity of Protein–DNA Recognition Revealed by Structure-based Potentials: Symmetric/Asymmetric and Cognate/Non-cognate Binding

Sequence-Dependent Conformational Energy of DNA Derived from Molecular Dynamics Simulations: Toward Understanding the Indirect Readout Mechanism in Protein−DNA Recognition

Genetic reclassification of porcine enteroviruses

Classification of Protein-DNA Complexes Based on Structural Descriptors

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