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Next-generation sequencing technology in clinical virology

Clinical microbiology and infection, 2013-01, Vol.19 (1), p.15-22

2013

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Evaluation of a rapid and sensitive RT-qPCR assay for the detection of Ebola Virus

Journal of virological methods, 2018-02, Vol.252, p.70-74

2018

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Detection of haemagglutinin D222 polymorphisms in influenza A(H1N1)pdm09-infected patients by ultra-deep pyrosequencing

Clinical microbiology and infection, 2013-07, Vol.19 (7), p.668-673

2013

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Quasispecies tropism and compartmentalization in gut and peripheral blood during early and chronic phases of HIV-1 infection: possible correlation with immune activation markers

Clinical microbiology and infection, 2014-03, Vol.20 (3), p.O157-O166

2014

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Bone marrow CD34+ progenitor cells may harbour HIV-DNA even in successfully treated patients

Clinical microbiology and infection, 2015-03, Vol.21 (3), p.290.e5-290.e8

2015

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Analysis of co‐receptor usage of circulating viral and proviral HIV genome quasispecies by ultra‐deep pyrosequencing in patients who are candidates for CCR5 antagonist treatment

Clinical microbiology and infection, 2011-05, Vol.17 (5), p.725-731

2011

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Comparison of real-time PCR methods for measurement of HIV-1 proviral DNA

Journal of virological methods, 2010-03, Vol.164 (1), p.135-138

2010

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HBV genetic compartimentalization, variability and molecular correlates of histologic and immunohistochemical aspects in liver tissue: implications for the clinical management of patients with chronic hepatitis B

Digestive and liver disease, 2015-02, Vol.47, p.e62-e63

2015

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Bcl-2 inhibits the caspase-dependent apoptosis induced by SARS-CoV without affecting virus replication kinetics

Archives of virology, 2006-02, Vol.151 (2), p.369-377

2006

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586 METHODS FOR VIRAL POPULATION RECONSTRUCTION VIA ULTRA-DEEP PYROSEQUENCING: HEPATITIS B VIRUS CASE STUDY

Journal of hepatology, 2009, Vol.50, p.S215-S216

2009

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890 ACTIVATION OF INNATE IMMUNITY CELLS MAY PREDICT EARLY HCV TREATMENT OUTCOME IN HIV/HCV CO-INFECTED PATIENTS

Journal of hepatology, 2009, Vol.50, p.S323-S323

2009

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Next-generation sequencing technology in clinical virology : Emerging new technologies in clinical virology

Clinical microbiology and infection, 2013, Vol.19 (1), p.15-22

2013

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Virological characterization of patients treated early is able to control HIV-1 replication after multiple cycles of structured therapy interruption

Journal of medical virology, 2007-08, Vol.79 (8), p.1047-1054

2007

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Detection of quasispecies variants predicted to use CXCR4 by ultra-deep pyrosequencing during early HIV infection

AIDS (London), 2011-03, Vol.25 (5), p.611-617

2011

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Longitudinal analysis of HIV-1 coreceptor tropism by single and triplicate HIV-1 RNA and DNA sequencing in patients undergoing successful first-line antiretroviral therapy

Journal of antimicrobial chemotherapy, 2014-03, Vol.69 (3), p.735-741

2014

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A Follow-Up of the Multicenter Collaborative Study on HIV-1 Drug Resistance and Tropism Testing Using 454 Ultra Deep Pyrosequencing

PloS one, 2016-01, Vol.11 (1), p.e0146687-e0146687

2016

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Evolution of HIV-1 tropism at quasispecies level after 5 years of combination antiretroviral therapy in patients always suppressed or experiencing episodes of virological failure

Journal of antimicrobial chemotherapy, 2014-11, Vol.69 (11), p.3085-3094

2014

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Bone marrow CD34+ progenitor cells may harbour HIV-DNA even in successfully treated patients: Virology

Clinical microbiology and infection, 2015-03, Vol.21 (3), p.290.e5-290.e8

2015

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An international multicenter study on HIV-1 drug resistance testing by 454 ultra-deep pyrosequencing

Journal of virological methods, 2014-08, Vol.204, p.31-37

2014

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Structural dynamics of V3 loop with different electrostatics: implications on co-receptor recognition: a molecular dynamics study of HIV gp120

Journal of biomolecular structure & dynamics, 2013-04, Vol.31 (4), p.403-413

2013

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'Sentinel' mutations in standard population sequencing can predict the presence of HIV-1 reverse transcriptase major mutations detectable only by ultra-deep pyrosequencing

Journal of antimicrobial chemotherapy, 2011-11, Vol.66 (11), p.2615-2623

2011

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Use of massive parallel pyrosequencing for near full-length characterization of a unique HIV Type 1 BF recombinant associated with a fatal primary infection

AIDS research and human retroviruses, 2009-09, Vol.25 (9), p.937-942

2009

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Archived HIV-1 minority variants detected by ultra-deep pyrosequencing in provirus may be fully replication competent

AIDS (London), 2009-11, Vol.23 (18), p.2541-2543

2009

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211 Virological Charactrization of HIV-1 Acute Infection by Ultra-Sensitive Next Generation Sequencing

Journal of acquired immune deficiency syndromes (1999), 2011-04, Vol.56 (Supplement 2), p.90

2011

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Coordinate induction of IFN-α and -γ by SARS-CoV also in the absence of virus replication

Virology (New York, N.Y.), 2005-10, Vol.341 (1), p.163-169

2005

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Next-generation sequencing technology in clinical virology

Evaluation of a rapid and sensitive RT-qPCR assay for the detection of Ebola Virus

Detection of haemagglutinin D222 polymorphisms in influenza A(H1N1)pdm09-infected patients by ultra-deep pyrosequencing

Quasispecies tropism and compartmentalization in gut and peripheral blood during early and chronic phases of HIV-1 infection: possible correlation with immune activation markers

Bone marrow CD34+ progenitor cells may harbour HIV-DNA even in successfully treated patients

Analysis of co‐receptor usage of circulating viral and proviral HIV genome quasispecies by ultra‐deep pyrosequencing in patients who are candidates for CCR5 antagonist treatment

Comparison of real-time PCR methods for measurement of HIV-1 proviral DNA

HBV genetic compartimentalization, variability and molecular correlates of histologic and immunohistochemical aspects in liver tissue: implications for the clinical management of patients with chronic hepatitis B

Bcl-2 inhibits the caspase-dependent apoptosis induced by SARS-CoV without affecting virus replication kinetics

586 METHODS FOR VIRAL POPULATION RECONSTRUCTION VIA ULTRA-DEEP PYROSEQUENCING: HEPATITIS B VIRUS CASE STUDY

890 ACTIVATION OF INNATE IMMUNITY CELLS MAY PREDICT EARLY HCV TREATMENT OUTCOME IN HIV/HCV CO-INFECTED PATIENTS

Next-generation sequencing technology in clinical virology : Emerging new technologies in clinical virology

Virological characterization of patients treated early is able to control HIV-1 replication after multiple cycles of structured therapy interruption

Detection of quasispecies variants predicted to use CXCR4 by ultra-deep pyrosequencing during early HIV infection

Longitudinal analysis of HIV-1 coreceptor tropism by single and triplicate HIV-1 RNA and DNA sequencing in patients undergoing successful first-line antiretroviral therapy

A Follow-Up of the Multicenter Collaborative Study on HIV-1 Drug Resistance and Tropism Testing Using 454 Ultra Deep Pyrosequencing

Evolution of HIV-1 tropism at quasispecies level after 5 years of combination antiretroviral therapy in patients always suppressed or experiencing episodes of virological failure

Bone marrow CD34+ progenitor cells may harbour HIV-DNA even in successfully treated patients: Virology

An international multicenter study on HIV-1 drug resistance testing by 454 ultra-deep pyrosequencing

Structural dynamics of V3 loop with different electrostatics: implications on co-receptor recognition: a molecular dynamics study of HIV gp120

'Sentinel' mutations in standard population sequencing can predict the presence of HIV-1 reverse transcriptase major mutations detectable only by ultra-deep pyrosequencing

Use of massive parallel pyrosequencing for near full-length characterization of a unique HIV Type 1 BF recombinant associated with a fatal primary infection

Archived HIV-1 minority variants detected by ultra-deep pyrosequencing in provirus may be fully replication competent

211 Virological Charactrization of HIV-1 Acute Infection by Ultra-Sensitive Next Generation Sequencing

Coordinate induction of IFN-α and -γ by SARS-CoV also in the absence of virus replication

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