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ORCAE: online resource for community annotation of eukaryotes

Nature methods, 2012-11, Vol.9 (11), p.1041-1041

2012

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Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences

Bioinformatics, 2004-11, Vol.20 (17), p.2911-2917

2004

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Generic eukaryotic core promoter prediction using structural features of DNA

Genome Research, 2008-02, Vol.18 (2), p.310-323

2008

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Predicting protein-protein interactions in Arabidopsis thaliana through integration of orthology, gene ontology and co-expression

BMC genomics, 2009-06, Vol.10 (1), p.288-288, Article 288

2009

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Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features

Proceedings of the National Academy of Sciences - PNAS, 2006-08, Vol.103 (31), p.11647-11652

2006

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A Comprehensive Analysis of Genes Encoding Small Secreted Proteins Identifies Candidate Effectors in Melampsora larici-populina (Poplar Leaf Rust)

Molecular plant-microbe interactions, 2012-03, Vol.25 (3), p.279-293

2012

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Current methods of gene prediction, their strengths and weaknesses

Nucleic acids research, 2002-10, Vol.30 (19), p.4103-4117

2002

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PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences

Nucleic acids research, 2002-01, Vol.30 (1), p.325-327

2002

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small RNA world of plants

The New phytologist, 2006-01, Vol.171 (3), p.451-468

2006

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ProSOM: core promoter prediction based on unsupervised clustering of DNA physical profiles

Bioinformatics, 2008-07, Vol.24 (13), p.i24-i31

2008

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Global expression analysis of the brown alga Ectocarpus siliculosus (Phaeophyceae) reveals large-scale reprogramming of the transcriptome in response to abiotic stress

Genome Biology, 2009-01, Vol.10 (6), p.R66-R66

2009

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A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling

Bioinformatics, 2001-12, Vol.17 (12), p.1113-1122

2001

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The complex intron landscape and massive intron invasion in a picoeukaryote provides insights into intron evolution

Genome biology and evolution, 2013-01, Vol.5 (12), p.2393-2401

2013

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SpliceMachine: predicting splice sites from high-dimensional local context representations

Bioinformatics, 2005-04, Vol.21 (8), p.1332-1338

2005

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Large-scale structural analysis of the core promoter in mammalian and plant genomes

Nucleic acids research, 2005-01, Vol.33 (13), p.4255-4264

2005

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Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine

BMC genomics, 2011-07, Vol.12 (1), p.368-368, Article 368

2011

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Higher Intron Loss Rate in Arabidopsis thaliana Than A. lyrata Is Consistent with Stronger Selection for a Smaller Genome

Molecular biology and evolution, 2012-02, Vol.29 (2), p.849-859

2012

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Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage

Genome Biology, 2012-01, Vol.13 (8), p.R74-R74

2012

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In search of the small ones: improved prediction of short exons in vertebrates, plants, fungi and protists

Bioinformatics, 2007-02, Vol.23 (4), p.414-420

2007

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Genome sequence of the recombinant protein production host Pichia pastoris

Nature biotechnology, 2009-06, Vol.27 (6), p.561-566

2009

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Computational approaches to identify promoters and cis-regulatory elements in plant genomes

Plant physiology (Bethesda), 2003-07, Vol.132 (3), p.1162-1176

2003

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Feature subset selection for splice site prediction

Bioinformatics, 2002-10, Vol.18 (suppl-2), p.S75-S83

2002

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Open access to sequence: browsing the Pichia pastoris genome

Microbial cell factories, 2009-10, Vol.8 (1), p.53-53

2009

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ORCAE: online resource for community annotation of eukaryotes

Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences

Generic eukaryotic core promoter prediction using structural features of DNA

Predicting protein-protein interactions in Arabidopsis thaliana through integration of orthology, gene ontology and co-expression

Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features

A Comprehensive Analysis of Genes Encoding Small Secreted Proteins Identifies Candidate Effectors in Melampsora larici-populina (Poplar Leaf Rust)

Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp

Current methods of gene prediction, their strengths and weaknesses

PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences

small RNA world of plants

ProSOM: core promoter prediction based on unsupervised clustering of DNA physical profiles

Global expression analysis of the brown alga Ectocarpus siliculosus (Phaeophyceae) reveals large-scale reprogramming of the transcriptome in response to abiotic stress

A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling

The complex intron landscape and massive intron invasion in a picoeukaryote provides insights into intron evolution

SpliceMachine: predicting splice sites from high-dimensional local context representations

Large-scale structural analysis of the core promoter in mammalian and plant genomes

Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine

Author Correction to: Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp

Higher Intron Loss Rate in Arabidopsis thaliana Than A. lyrata Is Consistent with Stronger Selection for a Smaller Genome

Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage

In search of the small ones: improved prediction of short exons in vertebrates, plants, fungi and protists

Genome sequence of the recombinant protein production host Pichia pastoris

Computational approaches to identify promoters and cis-regulatory elements in plant genomes

Feature subset selection for splice site prediction

Open access to sequence: browsing the Pichia pastoris genome

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