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Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo

Nature (London), 2014-01, Vol.505 (7485), p.701-705

2014

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Secondary structural ensembles of the SARS-CoV-2 RNA genome in infected cells

Nature communications, 2022-03, Vol.13 (1), p.1128-1128, Article 1128

2022

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Operon mRNAs are organized into ORF-centric structures that predict translation efficiency

eLife, 2017-01, Vol.6

2017

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Determination of RNA structural diversity and its role in HIV-1 RNA splicing

Nature (London), 2020-06, Vol.582 (7812), p.438-442

2020

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Causal signals between codon bias, mRNA structure, and the efficiency of translation and elongation

Molecular systems biology, 2014-12, Vol.10 (12), p.770-n/a

2014

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A Ribosome-Bound Quality Control Complex Triggers Degradation of Nascent Peptides and Signals Translation Stress

Cell, 2012-11, Vol.151 (5), p.1042-1054

2012

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3D RNA-scaffolded wireframe origami

Nature communications, 2023-01, Vol.14 (1), p.382-14, Article 382

2023

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Microarray Detection of Human Parainfluenzavirus 4 Infection Associated with Respiratory Failure in an Immunocompetent Adult

Clinical infectious diseases, 2006-10, Vol.43 (8), p.e71-e76

2006

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DMS-MaPseq for genome-wide or targeted RNA structure probing in vivo

Nature methods, 2017-01, Vol.14 (1), p.75

2017

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Viral RNA structure analysis using DMS-MaPseq

Methods (San Diego, Calif.), 2020-11, Vol.183, p.68-75

2020

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Diagnosis of a Critical Respiratory Illness Caused by Human Metapneumovirus by Use of a Pan-Virus Microarray

Journal of Clinical Microbiology, 2007-07, Vol.45 (7), p.2340-2343

2007

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RNA levers and switches controlling viral gene expression

Trends in biochemical sciences (Amsterdam. Regular ed.), 2023-04, Vol.48 (4), p.391-406

2023

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Utility of DNA Microarrays for Detection of Viruses in Acute Respiratory Tract Infections in Children

The Journal of pediatrics, 2008-07, Vol.153 (1), p.76-83.e1

2008

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Restricting intermolecular interactions among complementary sequences is required for the specificity of homotypic mRNA assembly

Biophysical journal, 2023-02, Vol.122 (3), p.441a-441a

2023

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DMS-MaPseq for Genome-Wide or Targeted RNA Structure Probing In Vitro and In Vivo

Methods in molecular biology (Clifton, N.J.), 2021, Vol.2254, p.219

2021

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A Stress Response that Monitors and Regulates mRNA Structure Is Central to Cold Shock Adaptation

Molecular cell, 2018-04, Vol.70 (2), p.274-286.e7

2018

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Repeat RNA structure and protein interactions influence RAN translation and neurodegenerative phenotypes in models of FTD and ALS

Alzheimer's & dementia, 2023-06, Vol.19 (S1), p.n/a

2023

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Structure of pre-miR-31 reveals an active role in Dicer–TRBP complex processing

Proceedings of the National Academy of Sciences - PNAS, 2023-09, Vol.120 (39), p.e2300527120-e2300527120

2023

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Genome-wide diversity and selective pressure in the human rhinovirus

Virology journal, 2007-05, Vol.4 (1), p.40-40

2007

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Web-based platform for analysis of RNA folding from high throughput chemical probing data

Nucleic acids research, 2022-07, Vol.50 (W1), p.W266

2022

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HnRNP A1/A2 Proteins Assemble onto 7SK snRNA via Context Dependent Interactions

Journal of molecular biology, 2021-04, Vol.433 (9), p.166885-166885, Article 166885

2021

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Pre-mRNA splicing order is predetermined and maintains splicing fidelity across multi-intronic transcripts

Nature structural & molecular biology, 2023-08, Vol.30 (8), p.1064

2023

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Recurrent emergence of Klebsiella pneumoniae carbapenem resistance mediated by an inhibitory ompK36 mRNA secondary structure

Proceedings of the National Academy of Sciences - PNAS, 2022-09, Vol.119 (38), p.1-e2203593119

2022

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Trypanosome RNA helicase KREH2 differentially controls non-canonical editing and putative repressive structure via a novel proposed 'bifunctional' gRNA in mRNA A6

Nucleic acids research, 2023-07, Vol.51 (13), p.6944

2023

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Pan-Viral Screening of Respiratory Tract Infections in Adults With and Without Asthma Reveals Unexpected Human Coronavirus and Human Rhinovirus Diversity

The Journal of infectious diseases, 2007-09, Vol.196 (6), p.817-825

2007

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Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo

Secondary structural ensembles of the SARS-CoV-2 RNA genome in infected cells

Operon mRNAs are organized into ORF-centric structures that predict translation efficiency

Determination of RNA structural diversity and its role in HIV-1 RNA splicing

Causal signals between codon bias, mRNA structure, and the efficiency of translation and elongation

A Ribosome-Bound Quality Control Complex Triggers Degradation of Nascent Peptides and Signals Translation Stress

3D RNA-scaffolded wireframe origami

Microarray Detection of Human Parainfluenzavirus 4 Infection Associated with Respiratory Failure in an Immunocompetent Adult

DMS-MaPseq for genome-wide or targeted RNA structure probing in vivo

Viral RNA structure analysis using DMS-MaPseq

Diagnosis of a Critical Respiratory Illness Caused by Human Metapneumovirus by Use of a Pan-Virus Microarray

RNA levers and switches controlling viral gene expression

Utility of DNA Microarrays for Detection of Viruses in Acute Respiratory Tract Infections in Children

Restricting intermolecular interactions among complementary sequences is required for the specificity of homotypic mRNA assembly

DMS-MaPseq for Genome-Wide or Targeted RNA Structure Probing In Vitro and In Vivo

A Stress Response that Monitors and Regulates mRNA Structure Is Central to Cold Shock Adaptation

Repeat RNA structure and protein interactions influence RAN translation and neurodegenerative phenotypes in models of FTD and ALS

Structure of pre-miR-31 reveals an active role in Dicer–TRBP complex processing

Genome-wide diversity and selective pressure in the human rhinovirus

Web-based platform for analysis of RNA folding from high throughput chemical probing data

HnRNP A1/A2 Proteins Assemble onto 7SK snRNA via Context Dependent Interactions

Pre-mRNA splicing order is predetermined and maintains splicing fidelity across multi-intronic transcripts

Recurrent emergence of Klebsiella pneumoniae carbapenem resistance mediated by an inhibitory ompK36 mRNA secondary structure

Trypanosome RNA helicase KREH2 differentially controls non-canonical editing and putative repressive structure via a novel proposed 'bifunctional' gRNA in mRNA A6

Pan-Viral Screening of Respiratory Tract Infections in Adults With and Without Asthma Reveals Unexpected Human Coronavirus and Human Rhinovirus Diversity

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