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Application of next generation sequencing in clinical microbiology and infection prevention

Journal of biotechnology, 2017-02, Vol.243, p.16-24

2017

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The dominance of human coronavirus OC43 and NL63 infections in infants

Journal of clinical virology, 2012-02, Vol.53 (2), p.135-139

2012

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Human bocavirus and KI/WU polyomaviruses in pediatric intensive care patients

Emerging infectious diseases, 2009-03, Vol.15 (3), p.454-457

2009

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Klebsiella pneumoniae species complex: From wastewater to the environment

One health, 2024-12, Vol.19, p.100880, Article 100880

2024

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Virulence and resistance properties of E. coli isolated from urine samples of hospitalized patients in Rio de Janeiro, Brazil – The role of mobile genetic elements

International journal of medical microbiology, 2020-12, Vol.310 (8), p.151453-151453, Article 151453

2020

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Self-collected gargle fluids and nasopharyngeal swabs as a strategy for molecular diagnostics of respiratory viruses

Journal of clinical virology plus, 2022-11, Vol.2 (4), p.100116, Article 100116

2022

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Performance Evaluation of the New Roche Cobas AmpliPrep/Cobas TaqMan HIV-1 Test Version 2.0 for Quantification of Human Immunodeficiency Virus Type 1 RNA

Journal of Clinical Microbiology, 2010-04, Vol.48 (4), p.1195-1200

2010

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Characterization of a CTX-M-15 Producing Klebsiella Pneumoniae Outbreak Strain Assigned to a Novel Sequence Type (1427)

Frontiers in microbiology, 2015, Vol.6, p.1250-1250

2015

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Next-generation sequencing in routine clinical microbiology and infectious diseases: an ESGMD-ESGEM ESCMID postgraduate course

New microbes and new infections, 2022-11, Vol.49-50, p.101046-101046, Article 101046

2022

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Diarrhea, Urosepsis and Hemolytic Uremic Syndrome Caused by the Same Heteropathogenic Escherichia coli Strain

The Pediatric infectious disease journal, 2016-09, Vol.35 (9), p.1045-1047

2016

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Characterization of the flanking region of the Shiga toxin operon in Stx2a bacteriophages reveals a diversity of the NanS-p sialate O-acetylesterase gene

AIMS microbiology, 2023-01, Vol.9 (3), p.570-590

2023

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Strong Association between Respiratory Viral Infection Early after Hematopoietic Stem Cell Transplantation and the Development of Life-Threatening Acute and Chronic Alloimmune Lung Syndromes

Biology of blood and marrow transplantation, 2010-06, Vol.16 (6), p.782-791

2010

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Interlaboratory Evaluation of Different Extraction and Real-Time PCR Methods for Detection of Coxiella burnetii DNA in Serum

Journal of Clinical Microbiology, 2010-11, Vol.48 (11), p.3923-3927

2010

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Next-generation sequencing for diagnosing infectious diseases

International journal of antimicrobial agents, 2021-09, Vol.58, p.21002417-21002417, Article 21002417

Rossen, John W.A.

2021

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Detection of a small IncX4 plasmid carrying the mcr-1.1 gene in a pig oral fluid sample by shotgun metagenomic sequencing

Journal of global antimicrobial resistance., 2021-03, Vol.24, p.205-206

2021

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Innovative and rapid antimicrobial susceptibility testing systems

Nature reviews. Microbiology, 2020-05, Vol.18 (5), p.299-311

2020

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Characterization of fosfomycin heteroresistance among multidrug-resistant Escherichia coli isolates from hospitalized patients in Rio de Janeiro, Brazil

Journal of global antimicrobial resistance., 2020-09, Vol.22, p.584-593

2020

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Virulence Factors of Enteric Pathogenic Escherichia coli: A Review

International journal of molecular sciences, 2021-09, Vol.22 (18), p.9922

2021

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Molecular Quantification of Respiratory Syncytial Virus in Respiratory Samples: Reliable Detection during the Initial Phase of Infection

Journal of Clinical Microbiology, 2010-10, Vol.48 (10), p.3569-3574

2010

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Evaluation of yield of currently available diagnostics by sample type to optimize detection of respiratory pathogens in patients with a community‐acquired pneumonia

Influenza and other respiratory viruses, 2014-03, Vol.8 (2), p.243-249

2014

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Identification by Genotyping of a Commercial Antigen Preparation as the Source of a Laboratory Contamination with Coxiella burnetii and as an Unexpected Rich Source of Control DNA

Journal of Clinical Microbiology, 2011-01, Vol.49 (1), p.383-384, Article 383

2011

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Prevalence and pathogenicity of WU and KI polyomaviruses in children, the Netherlands

Emerging infectious diseases, 2008-11, Vol.14 (11), p.1787-1789

2008

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Application of next generation sequencing in clinical microbiology and infection prevention

The dominance of human coronavirus OC43 and NL63 infections in infants

The challenges of designing a benchmark strategy for bioinformatics pipelines in the identification of antimicrobial resistance determinants using next generation sequencing technologies [version 2; peer review: 2 approved]

Human bocavirus and KI/WU polyomaviruses in pediatric intensive care patients

The challenges of designing a benchmark strategy for bioinformatics pipelines in the identification of antimicrobial resistance determinants using next generation sequencing technologies

Klebsiella pneumoniae species complex: From wastewater to the environment

Virulence and resistance properties of E. coli isolated from urine samples of hospitalized patients in Rio de Janeiro, Brazil – The role of mobile genetic elements

Self-collected gargle fluids and nasopharyngeal swabs as a strategy for molecular diagnostics of respiratory viruses

Performance Evaluation of the New Roche Cobas AmpliPrep/Cobas TaqMan HIV-1 Test Version 2.0 for Quantification of Human Immunodeficiency Virus Type 1 RNA

Characterization of a CTX-M-15 Producing Klebsiella Pneumoniae Outbreak Strain Assigned to a Novel Sequence Type (1427)

Next-generation sequencing in routine clinical microbiology and infectious diseases: an ESGMD-ESGEM ESCMID postgraduate course

Diarrhea, Urosepsis and Hemolytic Uremic Syndrome Caused by the Same Heteropathogenic Escherichia coli Strain

Characterization of the flanking region of the Shiga toxin operon in Stx2a bacteriophages reveals a diversity of the NanS-p sialate O-acetylesterase gene

Strong Association between Respiratory Viral Infection Early after Hematopoietic Stem Cell Transplantation and the Development of Life-Threatening Acute and Chronic Alloimmune Lung Syndromes

Interlaboratory Evaluation of Different Extraction and Real-Time PCR Methods for Detection of Coxiella burnetii DNA in Serum

Next-generation sequencing for diagnosing infectious diseases

Detection of a small IncX4 plasmid carrying the mcr-1.1 gene in a pig oral fluid sample by shotgun metagenomic sequencing

Innovative and rapid antimicrobial susceptibility testing systems

Characterization of fosfomycin heteroresistance among multidrug-resistant Escherichia coli isolates from hospitalized patients in Rio de Janeiro, Brazil

Virulence Factors of Enteric Pathogenic Escherichia coli: A Review

Advancing One Health: Updated core competencies

Molecular Quantification of Respiratory Syncytial Virus in Respiratory Samples: Reliable Detection during the Initial Phase of Infection

Evaluation of yield of currently available diagnostics by sample type to optimize detection of respiratory pathogens in patients with a community‐acquired pneumonia

Identification by Genotyping of a Commercial Antigen Preparation as the Source of a Laboratory Contamination with Coxiella burnetii and as an Unexpected Rich Source of Control DNA

Prevalence and pathogenicity of WU and KI polyomaviruses in children, the Netherlands

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