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A multi-path 2.5 dimensional convolutional neural network system for segmenting stroke lesions in brain MRI images

NeuroImage clinical, 2020-01, Vol.25, p.102118, Article 102118

2020

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Probalign: multiple sequence alignment using partition function posterior probabilities

Bioinformatics, 2006-11, Vol.22 (22), p.2715-2721

2006

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Defense Against Adversarial Attacks Based on Stochastic Descent Sign Activation Networks on Medical Images

International journal of pattern recognition and artificial intelligence, 2022-03, Vol.36 (3)

2022

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High scoring segment selection for pairwise whole genome sequence alignment with the maximum scoring subsequence and GPUs

International journal of computational biology and drug design, 2020, Vol.13 (1), p.71

2020

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Chi8: a GPU program for detecting significant interacting SNPs with the Chi-square 8-df test

BMC research notes, 2015-09, Vol.8 (1), p.436-436, Article 436

2015

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Diametrical clustering for identifying anti-correlated gene clusters

Bioinformatics, 2003-09, Vol.19 (13), p.1612-1619

2003

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Searching for evolutionary distant RNA homologs within genomic sequences using partition function posterior probabilities

BMC bioinformatics, 2008-01, Vol.9 (1), p.61-61, Article 61

2008

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MaxSSmap: a GPU program for mapping divergent short reads to genomes with the maximum scoring subsequence

BMC genomics, 2014-11, Vol.15 (1), p.969-969

2014

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Exploring Classification, Clustering, and Its Limits in a Compressed Hidden Space of a Single Layer Neural Network with Random Weights

Advances in Computational Intelligence, p.507-516

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Image Classification and Retrieval with Random Depthwise Signed Convolutional Neural Networks

Advances in Computational Intelligence, p.492-506

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Ranking causal variants and associated regions in genome-wide association studies by the support vector machine and random forest

Nucleic acids research, 2011-05, Vol.39 (9), p.e62-e62

2011

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Assessing the ability of sequence-based methods to provide functional insight within membrane integral proteins: a case study analyzing the neurotransmitter/Na+ symporter family

BMC bioinformatics, 2007-10, Vol.8 (1), p.397-397, Article 397

2007

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An Ensemble-Based Confidence Score to Increase Accuracy of Carotid Ultrasound Vessel Lumen Segmentation by Convolutional Neural Networks

Journal of vascular surgery, 2020-07, Vol.72 (1), p.e235-e236

2020

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High scoring segment selection for pairwise whole genome sequence alignment with the maximum scoring subsequence and GPUs

International journal of computational biology and drug design, 2020, Vol.13 (1), p.71

2020

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Designing fast converging phylogenetic methods

Bioinformatics, 2001-06, Vol.17 (suppl-1), p.S190-S198

2001

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Reconstruction of large phylogenetic trees: A parallel approach

Computational biology and chemistry, 2005-08, Vol.29 (4), p.273-280

2005

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Multiple sequence alignment using Probcons and Probalign

Methods in molecular biology (Clifton, N.J.), 2014, Vol.1079, p.147

Roshan, Usman

2014

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Brain Tumor Classification with Tumor Segmentations and a Dual Path Residual Convolutional Neural Network from MRI and Pathology Images

Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries, p.360-367

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A Multi-path Decoder Network for Brain Tumor Segmentation

Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries, p.255-265

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Cross-validation and cross-study validation of chronic lymphocytic leukaemia with exome sequences and machine learning

International journal of data mining and bioinformatics, 2016, Vol.16 (1), p.47

2016

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Cross-validation and cross-study validation of chronic lymphocytic leukaemia with exome sequences and machine learning

International journal of data mining and bioinformatics, 2016, Vol.16 (1), p.47

2016

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PLAST-ncRNA: Partition function Local Alignment Search Tool for non-coding RNA sequences

Nucleic acids research, 2010-07, Vol.38 (Web Server issue), p.W59-W63

2010

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Weighted Maximum Variance Dimensionality Reduction

Pattern Recognition, p.11-20

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Multi-path convolutional neural network for glioblastoma survival group prediction with point mutations and demographic features

2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2019, p.1274-1279

2019

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eProbalign: generation and manipulation of multiple sequence alignments using partition function posterior probabilities

Nucleic acids research, 2007-07, Vol.35 (Web Server issue), p.W675-W677

2007

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A multi-path 2.5 dimensional convolutional neural network system for segmenting stroke lesions in brain MRI images

Probalign: multiple sequence alignment using partition function posterior probabilities

Defense Against Adversarial Attacks Based on Stochastic Descent Sign Activation Networks on Medical Images

High scoring segment selection for pairwise whole genome sequence alignment with the maximum scoring subsequence and GPUs

Chi8: a GPU program for detecting significant interacting SNPs with the Chi-square 8-df test

Diametrical clustering for identifying anti-correlated gene clusters

Searching for evolutionary distant RNA homologs within genomic sequences using partition function posterior probabilities

MaxSSmap: a GPU program for mapping divergent short reads to genomes with the maximum scoring subsequence

Exploring Classification, Clustering, and Its Limits in a Compressed Hidden Space of a Single Layer Neural Network with Random Weights

Image Classification and Retrieval with Random Depthwise Signed Convolutional Neural Networks

Ranking causal variants and associated regions in genome-wide association studies by the support vector machine and random forest

Assessing the ability of sequence-based methods to provide functional insight within membrane integral proteins: a case study analyzing the neurotransmitter/Na+ symporter family

An Ensemble-Based Confidence Score to Increase Accuracy of Carotid Ultrasound Vessel Lumen Segmentation by Convolutional Neural Networks

High scoring segment selection for pairwise whole genome sequence alignment with the maximum scoring subsequence and GPUs

Designing fast converging phylogenetic methods

Reconstruction of large phylogenetic trees: A parallel approach

Multiple sequence alignment using Probcons and Probalign

Brain Tumor Classification with Tumor Segmentations and a Dual Path Residual Convolutional Neural Network from MRI and Pathology Images

A Multi-path Decoder Network for Brain Tumor Segmentation

Cross-validation and cross-study validation of chronic lymphocytic leukaemia with exome sequences and machine learning

Cross-validation and cross-study validation of chronic lymphocytic leukaemia with exome sequences and machine learning

PLAST-ncRNA: Partition function Local Alignment Search Tool for non-coding RNA sequences

Weighted Maximum Variance Dimensionality Reduction

Multi-path convolutional neural network for glioblastoma survival group prediction with point mutations and demographic features

eProbalign: generation and manipulation of multiple sequence alignments using partition function posterior probabilities

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