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A special issue of Essays in Biochemistry on computational biology

Essays in biochemistry, 2024-04, Vol.68 (1), p.1-3

2024

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Computational models as catalysts for investigating redoxin systems

Essays in biochemistry, 2024-04, Vol.68 (1), p.27-39

2024

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Deoxyxylulose 5-Phosphate Synthase Controls Flux through the Methylerythritol 4-Phosphate Pathway in Arabidopsis

Plant physiology (Bethesda), 2014-08, Vol.165 (4), p.1488-1504

2014

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Impact of glucocorticoid receptor density on ligand-independent dimerization, cooperative ligand-binding and basal priming of transactivation: a cell culture model

PloS one, 2013-05, Vol.8 (5), p.e64831-e64831

2013

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Functional Characterisation of Three Glycine N -Acyltransferase Variants and the Effect on Glycine Conjugation to Benzoyl-CoA

International journal of molecular sciences, 2021-03, Vol.22 (6), p.3129

2021

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Deoxyxylulose 5-Phosphate Synthase Does Not Play a Major Role in Regulating the Methylerythritol 4-Phosphate Pathway in Poplar

International journal of molecular sciences, 2024-04, Vol.25 (8), p.4181

2024

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Delving deeper: Relating the behaviour of a metabolic system to the properties of its components using symbolic metabolic control analysis

PloS one, 2018-11, Vol.13 (11), p.e0207983-e0207983

2018

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Atypical network topologies enhance the reductive capacity of pathogen thiol antioxidant defense networks

Redox biology, 2023-09, Vol.65, p.102802-102802, Article 102802

2023

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Applications of kinetic modeling to plant metabolism

Methods in molecular biology (Clifton, N.J.), 2014, Vol.1083, p.275

Rohwer, Johann M

2014

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The glutaredoxin mono- and di-thiol mechanisms for deglutathionylation are functionally equivalent: implications for redox systems biology

Bioscience reports, 2015-02, Vol.35 (1), p.e00173

2015

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Kinetic modelling of plant metabolic pathways

Journal of experimental botany, 2012-03, Vol.63 (6), p.2275-2292

Rohwer, Johann M.

2012

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Modelling the Decamerisation Cycle of PRDX1 and the Inhibition-like Effect on Its Peroxidase Activity

Antioxidants, 2023-09, Vol.12 (9), p.1707

2023

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Kinetic model of sucrose accumulation in maturing sugarcane culm tissue

Phytochemistry (Oxford), 2007-08, Vol.68 (16), p.2375-2392

2007

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Incorporating covalent and allosteric effects into rate equations: the case of muscle glycogen synthase

Biochemical journal, 2014-09, Vol.462 (3), p.525-537

2014

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Quantifying redox transcription factor dynamics as a tool to investigate redox signalling

Free radical biology & medicine, 2024-06, Vol.218, p.16-25

2024

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The thioredoxin redox potential and redox charge are surrogate measures for flux in the thioredoxin system

Archives of biochemistry and biophysics, 2020-02, Vol.680, p.108231-108231, Article 108231

2020

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Metabolic Control Analysis of Glycerol Synthesis in Saccharomyces cerevisiae

Applied and Environmental Microbiology, 2002-09, Vol.68 (9), p.4448-4456

2002

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EnzymeML: seamless data flow and modeling of enzymatic data

Nature methods, 2023-03, Vol.20 (3), p.400

2023

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Determining enzyme kinetics for systems biology with nuclear magnetic resonance spectroscopy

Metabolites, 2012-11, Vol.2 (4), p.818-843

2012

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Enzymes or redox couples? The kinetics of thioredoxin and glutaredoxin reactions in a systems biology context

Biochemical journal, 2009-01, Vol.417 (1), p.269-277

2009

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PySCeSToolbox: a collection of metabolic pathway analysis tools

Bioinformatics, 2018-01, Vol.34 (1), p.124-125

2018

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Quantitative measures for redox signaling

Free radical biology & medicine, 2016-07, Vol.96, p.290-303

2016

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STRENDA DB: enabling the validation and sharing of enzyme kinetics data

The FEBS journal, 2018-06, Vol.285 (12), p.2193-2204

2018

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Network Analysis of Enzyme Activities and Metabolite Levels and Their Relationship to Biomass in a Large Panel of Arabidopsis Accessions

The Plant cell, 2010-08, Vol.22 (8), p.2872-2893

2010

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Coupling kinetic models and advection–diffusion equations. 2. Sensitivity analysis of an advection–diffusion–reaction model

in silico plants, 2021-01, Vol.3 (1)

2021

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A special issue of Essays in Biochemistry on computational biology

Computational models as catalysts for investigating redoxin systems

Deoxyxylulose 5-Phosphate Synthase Controls Flux through the Methylerythritol 4-Phosphate Pathway in Arabidopsis

Impact of glucocorticoid receptor density on ligand-independent dimerization, cooperative ligand-binding and basal priming of transactivation: a cell culture model

Functional Characterisation of Three Glycine N -Acyltransferase Variants and the Effect on Glycine Conjugation to Benzoyl-CoA

Deoxyxylulose 5-Phosphate Synthase Does Not Play a Major Role in Regulating the Methylerythritol 4-Phosphate Pathway in Poplar

Delving deeper: Relating the behaviour of a metabolic system to the properties of its components using symbolic metabolic control analysis

Atypical network topologies enhance the reductive capacity of pathogen thiol antioxidant defense networks

Applications of kinetic modeling to plant metabolism

The glutaredoxin mono- and di-thiol mechanisms for deglutathionylation are functionally equivalent: implications for redox systems biology

Kinetic modelling of plant metabolic pathways

Modelling the Decamerisation Cycle of PRDX1 and the Inhibition-like Effect on Its Peroxidase Activity

Kinetic model of sucrose accumulation in maturing sugarcane culm tissue

Incorporating covalent and allosteric effects into rate equations: the case of muscle glycogen synthase

Quantifying redox transcription factor dynamics as a tool to investigate redox signalling

The thioredoxin redox potential and redox charge are surrogate measures for flux in the thioredoxin system

Metabolic Control Analysis of Glycerol Synthesis in Saccharomyces cerevisiae

EnzymeML: seamless data flow and modeling of enzymatic data

Determining enzyme kinetics for systems biology with nuclear magnetic resonance spectroscopy

Enzymes or redox couples? The kinetics of thioredoxin and glutaredoxin reactions in a systems biology context

PySCeSToolbox: a collection of metabolic pathway analysis tools

Quantitative measures for redox signaling

STRENDA DB: enabling the validation and sharing of enzyme kinetics data

Network Analysis of Enzyme Activities and Metabolite Levels and Their Relationship to Biomass in a Large Panel of Arabidopsis Accessions

Coupling kinetic models and advection–diffusion equations. 2. Sensitivity analysis of an advection–diffusion–reaction model

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