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Network‐Based Approaches for Drug Repositioning

Molecular informatics, 2022-05, Vol.41 (5), p.e2100200-n/a

2022

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Type III secretion system effectors form robust and flexible intracellular virulence networks

Science (American Association for the Advancement of Science), 2021-03, Vol.371 (6534), p.1122

2021

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PETrans: De Novo Drug Design with Protein-Specific Encoding Based on Transfer Learning

International journal of molecular sciences, 2023-01, Vol.24 (2), p.1146

2023

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Double Layers Self-Organized Spiking Neural P Systems With Anti-Spikes for Fingerprint Recognition

IEEE access, 2019, Vol.7, p.177562-177570

2019

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Molecular Computing and Bioinformatics

2019

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A Parallel Bioinspired Framework for Numerical Calculations Using Enzymatic P System With an Enzymatic Environment

IEEE access, 2018, Vol.6, p.65548-65556

2018

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Structural Hole Spanner in HumanNet Identifies Disease Gene and Drug targets

IEEE access, 2018-01, Vol.6, p.35392-35401

2018

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Will data analytics revolution finally bring SERS to the clinic?

TrAC, Trends in analytical chemistry (Regular ed.), 2023-12, Vol.169, p.117311, Article 117311

2023

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Tissue P systems

Theoretical computer science, 2003-03, Vol.296 (2), p.295-326

2003

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CSConv2d: A 2-D Structural Convolution Neural Network with a Channel and Spatial Attention Mechanism for Protein-Ligand Binding Affinity Prediction

Biomolecules (Basel, Switzerland), 2021-04, Vol.11 (5), p.643

2021

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U-Next: A Novel Convolution Neural Network With an Aggregation U-Net Architecture for Gallstone Segmentation in CT Images

IEEE access, 2019, Vol.7, p.166823-166832

2019

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AMDE: a novel attention-mechanism-based multidimensional feature encoder for drug–drug interaction prediction

Briefings in bioinformatics, 2022-01, Vol.23 (1)

2022

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DNA-Guided Assembly for Fibril Proteins

Mathematics (Basel), 2021-02, Vol.9 (4), p.404

2021

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MARPPI: boosting prediction of protein-protein interactions with multi-scale architecture residual network

Briefings in bioinformatics, 2023-01, Vol.24 (1)

2023

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DNMG: Deep molecular generative model by fusion of 3D information for de novo drug design

Methods (San Diego, Calif.), 2023-03, Vol.211, p.10-22

2023

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Meta-Path Methods for Prioritizing Candidate Disease miRNAs

IEEE/ACM transactions on computational biology and bioinformatics, 2019-01, Vol.16 (1), p.283-291

2019

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DeepFusion: A deep learning based multi-scale feature fusion method for predicting drug-target interactions

Methods (San Diego, Calif.), 2022-08, Vol.204, p.269-277

2022

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Probability-based collaborative filtering model for predicting gene-disease associations

BMC medical genomics, 2017-12, Vol.10 (Suppl 5), p.76-76, Article 76

2017

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An artificial intelligent diagnostic system on mobile Android terminals for cholelithiasis by lightweight convolutional neural network

PloS one, 2019-09, Vol.14 (9), p.e0221720

2019

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Grammar Based Crossover Operator in Genetic Programming

Artificial Intelligence and Knowledge Engineering Applications: A Bioinspired Approach, 2005, p.252-261

2005

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Spiking Neural P Systems With Colored Spikes

IEEE transactions on cognitive and developmental systems, 2018-12, Vol.10 (4), p.1106-1115

2018

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Deep Collaborative Filtering for Prediction of Disease Genes

IEEE/ACM transactions on computational biology and bioinformatics, 2020-09, Vol.17 (5), p.1639-1647

2020

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Multi-TransDTI: Transformer for Drug-Target Interaction Prediction Based on Simple Universal Dictionaries with Multi-View Strategy

Biomolecules (Basel, Switzerland), 2022-04, Vol.12 (5), p.644

2022

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Monodirectional tissue P systems with channel states

Information sciences, 2021-02, Vol.546, p.206-219

2021

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Molormer: a lightweight self-attention-based method focused on spatial structure of molecular graph for drug–drug interactions prediction

Briefings in bioinformatics, 2022-09, Vol.23 (5)

2022

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Network‐Based Approaches for Drug Repositioning

Type III secretion system effectors form robust and flexible intracellular virulence networks

PETrans: De Novo Drug Design with Protein-Specific Encoding Based on Transfer Learning

Double Layers Self-Organized Spiking Neural P Systems With Anti-Spikes for Fingerprint Recognition

Molecular Computing and Bioinformatics

A Parallel Bioinspired Framework for Numerical Calculations Using Enzymatic P System With an Enzymatic Environment

Structural Hole Spanner in HumanNet Identifies Disease Gene and Drug targets

Will data analytics revolution finally bring SERS to the clinic?

Tissue P systems

CSConv2d: A 2-D Structural Convolution Neural Network with a Channel and Spatial Attention Mechanism for Protein-Ligand Binding Affinity Prediction

U-Next: A Novel Convolution Neural Network With an Aggregation U-Net Architecture for Gallstone Segmentation in CT Images

AMDE: a novel attention-mechanism-based multidimensional feature encoder for drug–drug interaction prediction

DNA-Guided Assembly for Fibril Proteins

MARPPI: boosting prediction of protein-protein interactions with multi-scale architecture residual network

DNMG: Deep molecular generative model by fusion of 3D information for de novo drug design

Meta-Path Methods for Prioritizing Candidate Disease miRNAs

DeepFusion: A deep learning based multi-scale feature fusion method for predicting drug-target interactions

Probability-based collaborative filtering model for predicting gene-disease associations

An artificial intelligent diagnostic system on mobile Android terminals for cholelithiasis by lightweight convolutional neural network

Grammar Based Crossover Operator in Genetic Programming

Spiking Neural P Systems With Colored Spikes

Deep Collaborative Filtering for Prediction of Disease Genes

Multi-TransDTI: Transformer for Drug-Target Interaction Prediction Based on Simple Universal Dictionaries with Multi-View Strategy

Monodirectional tissue P systems with channel states

Molormer: a lightweight self-attention-based method focused on spatial structure of molecular graph for drug–drug interactions prediction

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