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Microbial defenses against mobile genetic elements and viruses: Who defends whom from what?

PLoS biology, 2022-01, Vol.20 (1), p.e3001514-e3001514

2022

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Cascading regime shifts within and across scales

Science (American Association for the Advancement of Science), 2018-12, Vol.362 (6421), p.1379-1383

2018

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Simulated epidemics in an empirical spatiotemporal network of 50,185 sexual contacts

PLoS computational biology, 2011-03, Vol.7 (3), p.e1001109-e1001109

2011

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Pervasive domestication of defective prophages by bacteria

Proceedings of the National Academy of Sciences - PNAS, 2014-08, Vol.111 (33), p.12127-12132

2014

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Diversification of the type IV filament superfamily into machines for adhesion, protein secretion, DNA uptake, and motility

PLoS biology, 2019-07, Vol.17 (7), p.e3000390-e3000390

2019

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The small, slow and specialized CRISPR and anti-CRISPR of Escherichia and Salmonella

PloS one, 2010-06, Vol.5 (6), p.e11126-e11126

2010

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Communication Systems

Third edition, 2022

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iNOS- and NOX1-dependent ROS production maintains bacterial homeostasis in the ileum of mice

Mucosal immunology, 2018-05, Vol.11 (3), p.774-784

2018

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CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins

Nucleic acids research, 2018-07, Vol.46 (W1), p.W246-W251

2018

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Horizontal transfer, not duplication, drives the expansion of protein families in prokaryotes

PLoS genetics, 2011-01, Vol.7 (1), p.e1001284

2011

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Silver nanoparticle conductive inks: synthesis, characterization, and fabrication of inkjet-printed flexible electrodes

Scientific reports, 2020-06, Vol.10 (1), p.8878-8878, Article 8878

2020

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Mobility of Plasmids

Microbiology and Molecular Biology Reviews, 2010-09, Vol.74 (3), p.434-452

2010

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The non-flagellar type III secretion system evolved from the bacterial flagellum and diversified into host-cell adapted systems

PLoS genetics, 2012-09, Vol.8 (9), p.e1002983-e1002983

2012

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MacSyFinder: a program to mine genomes for molecular systems with an application to CRISPR-Cas systems

PloS one, 2014-10, Vol.9 (10), p.e110726-e110726

2014

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Neutral Theory, Microbial Practice: Challenges in Bacterial Population Genetics

Molecular biology and evolution, 2018-06, Vol.35 (6), p.1338-1347

2018

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Phage-plasmids promote recombination and emergence of phages and plasmids

Nature communications, 2024-02, Vol.15 (1), p.1545-1545, Article 1545

2024

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The repertoire of ICE in prokaryotes underscores the unity, diversity, and ubiquity of conjugation

PLoS genetics, 2011-08, Vol.7 (8), p.e1002222-e1002222

2011

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Pathways for horizontal gene transfer in bacteria revealed by a global map of their plasmids

Nature communications, 2020-07, Vol.11 (1), p.3602-3602, Article 3602

2020

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The systemic imprint of growth and its uses in ecological (meta)genomics

PLoS genetics, 2010-01, Vol.6 (1), p.e1000808

2010

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Thermodynamic and spectroscopic properties of oxygen on silver under an oxygen atmosphere

Physical chemistry chemical physics : PCCP, 2015-01, Vol.17 (14), p.9288-9312

2015

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Interplay between the cell envelope and mobile genetic elements shapes gene flow in populations of the nosocomial pathogen Klebsiella pneumoniae

PLoS biology, 2021-07, Vol.19 (7), p.e3001276-e3001276

2021

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The Regime Shifts Database: a framework for analyzing regime shifts in social-ecological systems

Ecology and society, 2018-10, Vol.23 (3), p.9, Article art9

2018

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Exploiting temporal network structures of human interaction to effectively immunize populations

PloS one, 2012-05, Vol.7 (5), p.e36439-e36439

2012

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The chromosomal organization of horizontal gene transfer in bacteria

Nature communications, 2017-10, Vol.8 (1), p.841-11, Article 841

2017

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Human commensal gut Proteobacteria withstand type VI secretion attacks through immunity protein-independent mechanisms

Nature communications, 2021-10, Vol.12 (1), p.5751-5751, Article 5751

2021

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Microbial defenses against mobile genetic elements and viruses: Who defends whom from what?

Cascading regime shifts within and across scales

Simulated epidemics in an empirical spatiotemporal network of 50,185 sexual contacts

Pervasive domestication of defective prophages by bacteria

Diversification of the type IV filament superfamily into machines for adhesion, protein secretion, DNA uptake, and motility

The small, slow and specialized CRISPR and anti-CRISPR of Escherichia and Salmonella

Communication Systems

iNOS- and NOX1-dependent ROS production maintains bacterial homeostasis in the ileum of mice

CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins

Horizontal transfer, not duplication, drives the expansion of protein families in prokaryotes

Silver nanoparticle conductive inks: synthesis, characterization, and fabrication of inkjet-printed flexible electrodes

Mobility of Plasmids

The non-flagellar type III secretion system evolved from the bacterial flagellum and diversified into host-cell adapted systems

MacSyFinder: a program to mine genomes for molecular systems with an application to CRISPR-Cas systems

Neutral Theory, Microbial Practice: Challenges in Bacterial Population Genetics

Phage-plasmids promote recombination and emergence of phages and plasmids

The repertoire of ICE in prokaryotes underscores the unity, diversity, and ubiquity of conjugation

Pathways for horizontal gene transfer in bacteria revealed by a global map of their plasmids

The systemic imprint of growth and its uses in ecological (meta)genomics

Thermodynamic and spectroscopic properties of oxygen on silver under an oxygen atmosphere

Interplay between the cell envelope and mobile genetic elements shapes gene flow in populations of the nosocomial pathogen Klebsiella pneumoniae

The Regime Shifts Database: a framework for analyzing regime shifts in social-ecological systems

Exploiting temporal network structures of human interaction to effectively immunize populations

The chromosomal organization of horizontal gene transfer in bacteria

Human commensal gut Proteobacteria withstand type VI secretion attacks through immunity protein-independent mechanisms

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