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Using the antibody-antigen binding interface to train image-based deep neural networks for antibody-epitope classification

PLoS computational biology, 2021-03, Vol.17 (3), p.e1008864

2021

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Tracing the origin of the fungal α1 domain places its ancestor in the HMG-box superfamily: implication for fungal mating-type evolution

PloS one, 2010-12, Vol.5 (12), p.e15199-e15199

2010

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Modeling the Role of Epitope Arrangement on Antibody Binding Stoichiometry in Flaviviruses

Biophysical journal, 2016-10, Vol.111 (8), p.1641-1654

2016

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Molecular Simulations Reveal the Role of Antibody Fine Specificity and Viral Maturation State on Antibody-Dependent Enhancement of Infection in Dengue Virus

Frontiers in cellular and infection microbiology, 2019-06, Vol.9, p.200-200

2019

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Module evolution and substrate specificity of fungal nonribosomal peptide synthetases involved in siderophore biosynthesis

BMC evolutionary biology, 2008-12, Vol.8, p.328

2008

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Dengue virus antibody database: Systematically linking serotype-specificity with epitope mapping in dengue virus

PLoS neglected tropical diseases, 2017-02, Vol.11 (2), p.e0005395-e0005395

2017

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Structural modules for receptor dimerization in the S-locus receptor kinase extracellular domain

Proceedings of the National Academy of Sciences - PNAS, 2007-07, Vol.104 (29), p.12211-12216

2007

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Arabidopsis thaliana deficient in two chloroplast ascorbate peroxidases shows accelerated light-induced necrosis when levels of cellular ascorbate are low

Plant molecular biology, 2007-11, Vol.65 (5), p.627-644

2007

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Clp Protease Complexes from Photosynthetic and Non-photosynthetic Plastids and Mitochondria of Plants, Their Predicted Three-dimensional Structures, and Functional Implications

The Journal of biological chemistry, 2004-02, Vol.279 (6), p.4768-4781

2004

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Quantitative predictions of binding free energy changes in drug-resistant influenza neuraminidase

PLoS computational biology, 2012-08, Vol.8 (8), p.e1002665-e1002665

2012

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Comparative structural modeling and inference of conserved protein classes in Drosophila seminal fluid

Proceedings of the National Academy of Sciences - PNAS, 2004-09, Vol.101 (37), p.13542-13547

2004

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Tobacco etch virus Infectivity in Capsicum Spp. Is Determined by a Maximum of Three Amino Acids in the Viral Virulence Determinant VPg

Molecular plant-microbe interactions, 2012-12, Vol.25 (12), p.1562-1573

2012

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A fusion-inhibiting peptide against Rift Valley fever virus inhibits multiple, diverse viruses

PLoS neglected tropical diseases, 2013-09, Vol.7 (9), p.e2430-e2430

2013

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Transposase-Derived Transcription Factors Regulate Light Signaling in Arabidopsis

Science (American Association for the Advancement of Science), 2007-11, Vol.318 (5854), p.1302-1305

2007

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Structure of the Glucanase Inhibitor Protein (GIP) Family from Phytophthora Species Suggests Coevolution with Plant Endo-β-1,3-Glucanases

Molecular plant-microbe interactions, 2008-06, Vol.21 (6), p.820-830

2008

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Specificity Determinants and Diversification of the Brassica Self-Incompatibility Pollen Ligand

Proceedings of the National Academy of Sciences - PNAS, 2004-01, Vol.101 (4), p.911-917

2004

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Epitope mapping of Ebola virus dominant and subdominant glycoprotein epitopes facilitates construction of an epitope-based DNA vaccine able to focus the antibody response in mice

Human vaccines & immunotherapeutics, 2017-12, Vol.13 (12), p.2883-2893

2017

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Combinatorial peptide-based epitope mapping from Ebola virus DNA vaccines and infections reveals residue-level determinants of antibody binding

Human vaccines & immunotherapeutics, 2017-12, Vol.13 (12), p.2953-2966

2017

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Atomically Detailed Folding Simulation of the B Domain of Staphylococcal Protein A from Random Structures

Proceedings of the National Academy of Sciences - PNAS, 2003-12, Vol.100 (25), p.14812-14816

2003

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Protein Structure Prediction by Global Optimization of a Potential Energy Function

Proceedings of the National Academy of Sciences - PNAS, 1999-05, Vol.96 (10), p.5482-5485

1999

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A Surface Loop of the Potato Leafroll Virus Coat Protein Is Involved in Virion Assembly, Systemic Movement, and Aphid Transmission

Journal of Virology, 2005-01, Vol.79 (2), p.1207-1214

2005

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Tracing the Origin of the Fungal alpha 1 Domain Places Its Ancestor in the HMG-Box Superfamily: Implication for Fungal Mating-Type Evolution

PloS one, 2010-12, Vol.5 (2)

2010

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Molecular Origin of Anticooperativity in Hydrophobic Association

The journal of physical chemistry. B, 2005-04, Vol.109 (16), p.8108-8119

2005

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Functional Dissection of Naturally Occurring Amino Acid Substitutions in eIF4E That Confers Recessive Potyvirus Resistance in Plants

The Plant cell, 2007-09, Vol.19 (9), p.2913-2928

2007

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Nonyloxytryptamine mimics polysialic acid and modulates neuronal and glial functions in cell culture

Journal of neurochemistry, 2014-01, Vol.128 (1), p.88-100

2014

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Using the antibody-antigen binding interface to train image-based deep neural networks for antibody-epitope classification

Tracing the origin of the fungal α1 domain places its ancestor in the HMG-box superfamily: implication for fungal mating-type evolution

Modeling the Role of Epitope Arrangement on Antibody Binding Stoichiometry in Flaviviruses

Molecular Simulations Reveal the Role of Antibody Fine Specificity and Viral Maturation State on Antibody-Dependent Enhancement of Infection in Dengue Virus

Module evolution and substrate specificity of fungal nonribosomal peptide synthetases involved in siderophore biosynthesis

Dengue virus antibody database: Systematically linking serotype-specificity with epitope mapping in dengue virus

Structural modules for receptor dimerization in the S-locus receptor kinase extracellular domain

Arabidopsis thaliana deficient in two chloroplast ascorbate peroxidases shows accelerated light-induced necrosis when levels of cellular ascorbate are low

Clp Protease Complexes from Photosynthetic and Non-photosynthetic Plastids and Mitochondria of Plants, Their Predicted Three-dimensional Structures, and Functional Implications

Quantitative predictions of binding free energy changes in drug-resistant influenza neuraminidase

Comparative structural modeling and inference of conserved protein classes in Drosophila seminal fluid

Tobacco etch virus Infectivity in Capsicum Spp. Is Determined by a Maximum of Three Amino Acids in the Viral Virulence Determinant VPg

A fusion-inhibiting peptide against Rift Valley fever virus inhibits multiple, diverse viruses

Transposase-Derived Transcription Factors Regulate Light Signaling in Arabidopsis

Structure of the Glucanase Inhibitor Protein (GIP) Family from Phytophthora Species Suggests Coevolution with Plant Endo-β-1,3-Glucanases

Specificity Determinants and Diversification of the Brassica Self-Incompatibility Pollen Ligand

Epitope mapping of Ebola virus dominant and subdominant glycoprotein epitopes facilitates construction of an epitope-based DNA vaccine able to focus the antibody response in mice

Combinatorial peptide-based epitope mapping from Ebola virus DNA vaccines and infections reveals residue-level determinants of antibody binding

Atomically Detailed Folding Simulation of the B Domain of Staphylococcal Protein A from Random Structures

Protein Structure Prediction by Global Optimization of a Potential Energy Function

A Surface Loop of the Potato Leafroll Virus Coat Protein Is Involved in Virion Assembly, Systemic Movement, and Aphid Transmission

Tracing the Origin of the Fungal alpha 1 Domain Places Its Ancestor in the HMG-Box Superfamily: Implication for Fungal Mating-Type Evolution

Molecular Origin of Anticooperativity in Hydrophobic Association

Functional Dissection of Naturally Occurring Amino Acid Substitutions in eIF4E That Confers Recessive Potyvirus Resistance in Plants

Nonyloxytryptamine mimics polysialic acid and modulates neuronal and glial functions in cell culture

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