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Transmembrane topology and signal peptide prediction using dynamic bayesian networks

PLoS computational biology, 2008-11, Vol.4 (11), p.e1000213-e1000213

2008

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Kojak: Efficient Analysis of Chemically Cross-Linked Protein Complexes

Journal of proteome research, 2015-05, Vol.14 (5), p.2190-2198

2015

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Large-scale prediction of protein-protein interactions from structures

BMC bioinformatics, 2010-03, Vol.11 (1), p.144-144, Article 144

2010

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Survey of metaproteomics software tools for functional microbiome analysis

PloS one, 2020-11, Vol.15 (11), p.e0241503-e0241503

2020

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Integrating Discovery-driven Proteomics and Selected Reaction Monitoring To Develop a Noninvasive Assay for Geoduck Reproductive Maturation

Journal of proteome research, 2017-09, Vol.16 (9), p.3298-3309

2017

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Regulation of outer kinetochore Ndc80 complex-based microtubule attachments by the central kinetochore Mis12/MIND complex

Proceedings of the National Academy of Sciences - PNAS, 2015-10, Vol.112 (41), p.E5583-E5589

2015

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The Ndc80 complex bridges two Dam1 complex rings

eLife, 2017-02, Vol.6

2017

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The Yeast Resource Center Public Image Repository: A large database of fluorescence microscopy images

BMC bioinformatics, 2010-05, Vol.11 (1), p.263-263, Article 263

2010

Volltextzugriff (PDF)

MetaGOmics: A Web-Based Tool for Peptide-Centric Functional and Taxonomic Analysis of Metaproteomics Data

Proteomes, 2017-12, Vol.6 (1), p.2

2017

Volltextzugriff (PDF)

Assigning Function to Yeast Proteins by Integration of Technologies

Molecular cell, 2003-12, Vol.12 (6), p.1353-1365

2003

Volltextzugriff (PDF)

SnipViz: a compact and lightweight web site widget for display and dissemination of multiple versions of gene and protein sequences

BMC research notes, 2014-07, Vol.7 (1), p.468-468, Article 468

2014

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Novel phosphorylation states of the yeast spindle pole body

Biology open, 2018, Vol.7 (10)

2018

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Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology

PLoS biology, 2007-04, Vol.5 (4), p.e76-e76

2007

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Human Ska complex and Ndc80 complex interact to form a load-bearing assembly that strengthens kinetochore–microtubule attachments

Proceedings of the National Academy of Sciences - PNAS, 2018-03, Vol.115 (11), p.2740-2745

2018

Volltextzugriff (PDF)

ProXL (Protein Cross-Linking Database): A Platform for Analysis, Visualization, and Sharing of Protein Cross-Linking Mass Spectrometry Data

Journal of proteome research, 2016-08, Vol.15 (8), p.2863-2870

2016

Volltextzugriff (PDF)

Dissecting DNA damage response pathways by analysing protein localization and abundance changes during DNA replication stress

Nature cell biology, 2012-09, Vol.14 (9), p.966

2012

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Three interacting regions of the Ndc80 and Dam1 complexes support microtubule tip-coupling under load

The Journal of cell biology, 2022-05, Vol.221 (5), p.1

2022

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Discovery and Visualization of Uncharacterized Drug–Protein Adducts Using Mass Spectrometry

Analytical chemistry (Washington), 2022-03, Vol.94 (8), p.3501-3509

2022

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A Workflow for Improved Analysis of Cross-Linking Mass Spectrometry Data Integrating Parallel Accumulation-Serial Fragmentation with MeroX and Skyline

Analytical chemistry (Washington), 2024-05, Vol.96 (19), p.7373-7379

2024

Volltextzugriff (PDF)

Evaluating the Performance of the Astral Mass Analyzer for Quantitative Proteomics Using Data-Independent Acquisition

Journal of proteome research, 2023-10, Vol.22 (10), p.3290-3300

2023

Volltextzugriff (PDF)

Critical decisions in metaproteomics: achieving high confidence protein annotations in a sea of unknowns

The ISME Journal, 2017-02, Vol.11 (2), p.309-314

2017

Volltextzugriff (PDF)

Integrative phenomics reveals insight into the structure of phenotypic diversity in budding yeast

Genome research, 2013-09, Vol.23 (9), p.1496

2013

Volltextzugriff (PDF)

Proxl (Protein Cross-Linking Database): A Public Server, QC Tools, and Other Major Updates

Journal of proteome research, 2019-02, Vol.18 (2), p.759-764

2019

Volltextzugriff (PDF)

Improved Analysis of Cross-Linking Mass Spectrometry Data with Kojak 2.0, Advanced by Integration into the Trans-Proteomic Pipeline

Journal of proteome research, 2023-02, Vol.22 (2), p.647-655

2023

Volltextzugriff (PDF)

Cullin-independent recognition of HHARI substrates by a dynamic RBR catalytic domain

Structure (London), 2022-09, Vol.30 (9), p.1269-1284.e6

2022

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Transmembrane topology and signal peptide prediction using dynamic bayesian networks

Kojak: Efficient Analysis of Chemically Cross-Linked Protein Complexes

Large-scale prediction of protein-protein interactions from structures

Survey of metaproteomics software tools for functional microbiome analysis

Integrating Discovery-driven Proteomics and Selected Reaction Monitoring To Develop a Noninvasive Assay for Geoduck Reproductive Maturation

Regulation of outer kinetochore Ndc80 complex-based microtubule attachments by the central kinetochore Mis12/MIND complex

The Ndc80 complex bridges two Dam1 complex rings

The Yeast Resource Center Public Image Repository: A large database of fluorescence microscopy images

MetaGOmics: A Web-Based Tool for Peptide-Centric Functional and Taxonomic Analysis of Metaproteomics Data

Assigning Function to Yeast Proteins by Integration of Technologies

SnipViz: a compact and lightweight web site widget for display and dissemination of multiple versions of gene and protein sequences

Novel phosphorylation states of the yeast spindle pole body

Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology

Human Ska complex and Ndc80 complex interact to form a load-bearing assembly that strengthens kinetochore–microtubule attachments

ProXL (Protein Cross-Linking Database): A Platform for Analysis, Visualization, and Sharing of Protein Cross-Linking Mass Spectrometry Data

Dissecting DNA damage response pathways by analysing protein localization and abundance changes during DNA replication stress

Three interacting regions of the Ndc80 and Dam1 complexes support microtubule tip-coupling under load

Discovery and Visualization of Uncharacterized Drug–Protein Adducts Using Mass Spectrometry

A Workflow for Improved Analysis of Cross-Linking Mass Spectrometry Data Integrating Parallel Accumulation-Serial Fragmentation with MeroX and Skyline

Evaluating the Performance of the Astral Mass Analyzer for Quantitative Proteomics Using Data-Independent Acquisition

Critical decisions in metaproteomics: achieving high confidence protein annotations in a sea of unknowns

Integrative phenomics reveals insight into the structure of phenotypic diversity in budding yeast

Proxl (Protein Cross-Linking Database): A Public Server, QC Tools, and Other Major Updates

Improved Analysis of Cross-Linking Mass Spectrometry Data with Kojak 2.0, Advanced by Integration into the Trans-Proteomic Pipeline

Cullin-independent recognition of HHARI substrates by a dynamic RBR catalytic domain

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