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Ineffectual Type 2–to–Type 1 Alveolar Epithelial Cell Differentiation in Idiopathic Pulmonary Fibrosis: Persistence of the KRT8hi Transitional State

American journal of respiratory and critical care medicine, 2020-06, Vol.201 (11), p.1443-1447

2020

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Venetoclax with azacitidine disrupts energy metabolism and targets leukemia stem cells in patients with acute myeloid leukemia

Nature medicine, 2018-12, Vol.24 (12), p.1859-1866

2018

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Cell-level metadata are indispensable for documenting single-cell sequencing datasets

PLoS biology, 2021-05, Vol.19 (5), p.e3001077-e3001077

2021

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The Na+-dependent chloride-bicarbonate exchanger SLC4A8 mediates an electroneutral Na+ reabsorption process in the renal cortical collecting ducts of mice

The Journal of clinical investigation, 2010-05, Vol.120 (5), p.1627-1635

2010

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Fatal COVID-19 and Non–COVID-19 Acute Respiratory Distress Syndrome Is Associated with Incomplete Alveolar Type 1 Epithelial Cell Differentiation from the Transitional State without Fibrosis

The American journal of pathology, 2022-03, Vol.192 (3), p.454-467

2022

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XPO5 promotes primary miRNA processing independently of RanGTP

Nature communications, 2020-04, Vol.11 (1), p.1845-1845, Article 1845

2020

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Single-Cell RNA Sequencing of Childhood Ependymoma Reveals Neoplastic Cell Subpopulations That Impact Molecular Classification and Etiology

Cell reports (Cambridge), 2020-08, Vol.32 (6), p.108023-108023, Article 108023

2020

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Regulation of epithelial transitional states in murine and human pulmonary fibrosis

The Journal of clinical investigation, 2023-11, Vol.133 (22), p.1-17

2023

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Chronic Liver Disease in Humans Causes Expansion and Differentiation of Liver Lymphatic Endothelial Cells

Frontiers in immunology, 2019-05, Vol.10, p.1036

2019

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Simultaneous measurement of biochemical phenotypes and gene expression in single cells

Nucleic acids research, 2020-06, Vol.48 (10), p.e59-e59

2020

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Neoplastic and immune single-cell transcriptomics define subgroup-specific intra-tumoral heterogeneity of childhood medulloblastoma

Neuro-oncology (Charlottesville, Va.), 2022-02, Vol.24 (2), p.273-286

2022

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TCR signal strength controls thymic differentiation of iNKT cell subsets

Nature communications, 2018-07, Vol.9 (1), p.2650-13, Article 2650

2018

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clustifyr: an R package for automated single-cell RNA sequencing cluster classification [version 2; peer review: 2 approved]

F1000 research, 2020, Vol.9, p.223-223

2020

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Dynamic temperature-sensitive A-to-I RNA editing in the brain of a heterothermic mammal during hibernation

RNA (Cambridge), 2018-11, Vol.24 (11), p.1481-1495

2018

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Single cell RNA sequencing identifies TGFβ as a key regenerative cue following LPS-induced lung injury

JCI insight, 2019-04, Vol.5 (8)

2019

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Liver Transcriptome Dynamics During Hibernation Are Shaped by a Shifting Balance Between Transcription and RNA Stability

Frontiers in physiology, 2021-05, Vol.12, p.662132

2021

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ENTPD3 Marks Mature Stem Cell-Derived β-Cells Formed by Self-Aggregation In Vitro

Diabetes (New York, N.Y.), 2021-11, Vol.70 (11), p.2554-2567

2021

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Genome-wide analysis of Musashi-2 targets reveals novel functions in governing epithelial cell migration

Nucleic acids research, 2016-05, Vol.44 (8), p.3788-3800

2016

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Spatial transcriptomic analysis delineates epithelial and mesenchymal subpopulations and transition stages in childhood ependymoma

Neuro-oncology (Charlottesville, Va.), 2023-04, Vol.25 (4), p.786-798

2023

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Overexpression of Pendrin in Intercalated Cells Produces Chloride-Sensitive Hypertension

Journal of the American Society of Nephrology, 2013-07, Vol.24 (7), p.1104-1113

2013

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Dynamic RNA Regulation in the Brain Underlies Physiological Plasticity in a Hibernating Mammal

Frontiers in physiology, 2021-01, Vol.11, p.624677-624677

2021

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Integration of single-nuclei RNA-sequencing, spatial transcriptomics and histochemistry defines the complex microenvironment of NF1-associated plexiform neurofibromas

Acta neuropathologica communications, 2023-09, Vol.11 (1), p.1-158, Article 158

2023

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Significant increase of high-risk chromosome 1q gain and 6q loss at recurrence in posterior fossa group A ependymoma: A multicenter study

Neuro-oncology (Charlottesville, Va.), 2023-10, Vol.25 (10), p.1854-1867

2023

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Recovery and analysis of transcriptome subsets from pooled single-cell RNA-seq libraries

Nucleic acids research, 2019-02, Vol.47 (4), p.e20-e20

2019

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Ineffectual Type 2–to–Type 1 Alveolar Epithelial Cell Differentiation in Idiopathic Pulmonary Fibrosis: Persistence of the KRT8hi Transitional State

Venetoclax with azacitidine disrupts energy metabolism and targets leukemia stem cells in patients with acute myeloid leukemia

Cell-level metadata are indispensable for documenting single-cell sequencing datasets

The Na+-dependent chloride-bicarbonate exchanger SLC4A8 mediates an electroneutral Na+ reabsorption process in the renal cortical collecting ducts of mice

Fatal COVID-19 and Non–COVID-19 Acute Respiratory Distress Syndrome Is Associated with Incomplete Alveolar Type 1 Epithelial Cell Differentiation from the Transitional State without Fibrosis

Monocytic Subclones Confer Resistance to Venetoclax-Based Therapy in Patients with Acute Myeloid Leukemia

XPO5 promotes primary miRNA processing independently of RanGTP

Single-Cell RNA Sequencing of Childhood Ependymoma Reveals Neoplastic Cell Subpopulations That Impact Molecular Classification and Etiology

Regulation of epithelial transitional states in murine and human pulmonary fibrosis

Chronic Liver Disease in Humans Causes Expansion and Differentiation of Liver Lymphatic Endothelial Cells

Simultaneous measurement of biochemical phenotypes and gene expression in single cells

Neoplastic and immune single-cell transcriptomics define subgroup-specific intra-tumoral heterogeneity of childhood medulloblastoma

TCR signal strength controls thymic differentiation of iNKT cell subsets

clustifyr: an R package for automated single-cell RNA sequencing cluster classification [version 2; peer review: 2 approved]

Dynamic temperature-sensitive A-to-I RNA editing in the brain of a heterothermic mammal during hibernation

Single cell RNA sequencing identifies TGFβ as a key regenerative cue following LPS-induced lung injury

Liver Transcriptome Dynamics During Hibernation Are Shaped by a Shifting Balance Between Transcription and RNA Stability

ENTPD3 Marks Mature Stem Cell-Derived β-Cells Formed by Self-Aggregation In Vitro

Genome-wide analysis of Musashi-2 targets reveals novel functions in governing epithelial cell migration

Spatial transcriptomic analysis delineates epithelial and mesenchymal subpopulations and transition stages in childhood ependymoma

Overexpression of Pendrin in Intercalated Cells Produces Chloride-Sensitive Hypertension

Dynamic RNA Regulation in the Brain Underlies Physiological Plasticity in a Hibernating Mammal

Integration of single-nuclei RNA-sequencing, spatial transcriptomics and histochemistry defines the complex microenvironment of NF1-associated plexiform neurofibromas

Significant increase of high-risk chromosome 1q gain and 6q loss at recurrence in posterior fossa group A ependymoma: A multicenter study

Recovery and analysis of transcriptome subsets from pooled single-cell RNA-seq libraries

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