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Multimodal deep learning applied to classify healthy and disease states of human microbiome

Scientific reports, 2022-01, Vol.12 (1), p.824-824, Article 824

2022

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FragGeneScan: predicting genes in short and error-prone reads

Nucleic acids research, 2010-11, Vol.38 (20), p.e191

2010

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A Multimodal Deep Learning Method for Android Malware Detection Using Various Features

IEEE transactions on information forensics and security, 2019-03, Vol.14 (3), p.773-788

2019

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Functional dynamics of bacterial species in the mouse gut microbiome revealed by metagenomic and metatranscriptomic analyses

PloS one, 2020-01, Vol.15 (1), p.e0227886-e0227886

2020

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Discovering microbe-disease associations from the literature using a hierarchical long short-term memory network and an ensemble parser model

Scientific reports, 2021-02, Vol.11 (1), p.4490-4490, Article 4490

2021

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Data-Driven Modeling for Species-Level Taxonomic Assignment From 16S rRNA: Application to Human Microbiomes

Frontiers in microbiology, 2020-11, Vol.11, p.570825-570825

2020

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Deciphering Resistome in Patients With Chronic Obstructive Pulmonary Diseases and Clostridioides difficile Infections

Frontiers in microbiology, 2022-08, Vol.13

2022

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Genome-Wide Characterization of Endogenous Retroviruses in the Bat Myotis lucifugus Reveals Recent and Diverse Infections

Journal of Virology, 2013-08, Vol.87 (15), p.8493-8501

2013

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Diverse CRISPRs evolving in human microbiomes

PLoS genetics, 2012-06, Vol.8 (6), p.e1002441-e1002441

2012

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Photosynthetic functions of Synechococcus in the ocean microbiomes of diverse salinity and seasons

PloS one, 2018-01, Vol.13 (1), p.e0190266-e0190266

2018

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Helicobacter pylori-derived extracellular vesicles increased in the gastric juices of gastric adenocarcinoma patients and induced inflammation mainly via specific targeting of gastric epithelial cells

Experimental & molecular medicine, 2017-05, Vol.49 (5), p.e330-e330

2017

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A case study on the distribution of the environmental resistome in Korean shrimp farms

Ecotoxicology and environmental safety, 2021-12, Vol.227, p.112858-112858, Article 112858

2021

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Altered gut microbiota by azithromycin attenuates airway inflammation in allergic asthma

Journal of allergy and clinical immunology, 2020-05, Vol.145 (5), p.1466-1469.e8

2020

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MegaR: an interactive R package for rapid sample classification and phenotype prediction using metagenome profiles and machine learning

BMC bioinformatics, 2021-01, Vol.22 (1), p.25-25, Article 25

2021

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Comparative analyses of the faecal resistome against β-lactam and quinolone antibiotics in humans and livestock using metagenomic sequencing

Scientific reports, 2023-11, Vol.13 (1), p.20993-20993, Article 20993

2023

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Application of computational approaches to analyze metagenomic data

The Journal of Microbiology, 2021, 59(3), , pp.233-241

2021

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Metagenomic characterization of sphingomyelinase C in the microbiome of humans and environments

Frontiers in cellular and infection microbiology, 2022-11, Vol.12, p.1015706-1015706

2022

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MGEScan: a Galaxy-based system for identifying retrotransposons in genomes

Bioinformatics (Oxford, England), 2016-08, Vol.32 (16), p.2502-2504

2016

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High fecal carriage of blaCTX-M, blaCMY-2, and plasmid-mediated quinolone resistance genes among healthy Korean people in a metagenomic analysis

Scientific reports, 2021-03, Vol.11 (1), p.5874-5874, Article 5874

2021

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Discovery and Characterization of Polymyxin-Resistance Genes pmrE and pmrF from Sediment and Seawater Microbiome

Microbiology spectrum, 2023-02, Vol.11 (1), p.e0273622-e0273622

2023

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High fecal carriage of bla CTX-M, bla CMY-2, and plasmid-mediated quinolone resistance genes among healthy Korean people in a metagenomic analysis

Scientific reports, 2021-12, Vol.11 (1), p.1-9

2021

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The Repatterning of Eukaryotic Genomes by Random Genetic Drift

Annual review of genomics and human genetics, 2011-01, Vol.12 (1), p.347-366

2011

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Diverse Distribution of Resistomes in the Human and Environmental Microbiomes

Current genomics, 2018-12, Vol.19 (8), p.701-711

2018

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iMGEins: detecting novel mobile genetic elements inserted in individual genomes

BMC genomics, 2018-12, Vol.19 (1), p.944-944, Article 944

2018

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Different maturation of gut microbiome in Korean children

Frontiers in microbiology, 2022-11, Vol.13, p.1036533-1036533

2022

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Multimodal deep learning applied to classify healthy and disease states of human microbiome

FragGeneScan: predicting genes in short and error-prone reads

A Multimodal Deep Learning Method for Android Malware Detection Using Various Features

Functional dynamics of bacterial species in the mouse gut microbiome revealed by metagenomic and metatranscriptomic analyses

Discovering microbe-disease associations from the literature using a hierarchical long short-term memory network and an ensemble parser model

Data-Driven Modeling for Species-Level Taxonomic Assignment From 16S rRNA: Application to Human Microbiomes

Deciphering Resistome in Patients With Chronic Obstructive Pulmonary Diseases and Clostridioides difficile Infections

Genome-Wide Characterization of Endogenous Retroviruses in the Bat Myotis lucifugus Reveals Recent and Diverse Infections

Diverse CRISPRs evolving in human microbiomes

Photosynthetic functions of Synechococcus in the ocean microbiomes of diverse salinity and seasons

Helicobacter pylori-derived extracellular vesicles increased in the gastric juices of gastric adenocarcinoma patients and induced inflammation mainly via specific targeting of gastric epithelial cells

A case study on the distribution of the environmental resistome in Korean shrimp farms

Altered gut microbiota by azithromycin attenuates airway inflammation in allergic asthma

MegaR: an interactive R package for rapid sample classification and phenotype prediction using metagenome profiles and machine learning

Comparative analyses of the faecal resistome against β-lactam and quinolone antibiotics in humans and livestock using metagenomic sequencing

Application of computational approaches to analyze metagenomic data

Metagenomic characterization of sphingomyelinase C in the microbiome of humans and environments

MGEScan: a Galaxy-based system for identifying retrotransposons in genomes

High fecal carriage of blaCTX-M, blaCMY-2, and plasmid-mediated quinolone resistance genes among healthy Korean people in a metagenomic analysis

Discovery and Characterization of Polymyxin-Resistance Genes pmrE and pmrF from Sediment and Seawater Microbiome

High fecal carriage of bla CTX-M, bla CMY-2, and plasmid-mediated quinolone resistance genes among healthy Korean people in a metagenomic analysis

The Repatterning of Eukaryotic Genomes by Random Genetic Drift

Diverse Distribution of Resistomes in the Human and Environmental Microbiomes

iMGEins: detecting novel mobile genetic elements inserted in individual genomes

Different maturation of gut microbiome in Korean children

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