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Rapid and accurate determination of atomistic RNA dynamic ensemble models using NMR and structure prediction

Nature communications, 2020-11, Vol.11 (1), p.5531-14, Article 5531

2020

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High-performance virtual screening by targeting a high-resolution RNA dynamic ensemble

Nature structural & molecular biology, 2018-05, Vol.25 (5), p.425

2018

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Practical considerations for the measurement of near-surface electrostatics based on solvent paramagnetic relaxation enhancements

Journal of magnetic resonance (1997), 2023-04, Vol.349, p.107400-107400, Article 107400

2023

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A delayed decoupling methyl-TROSY pulse sequence for atomic resolution studies of folded proteins and RNAs in condensates

Journal of magnetic resonance (1997), 2024-05, Vol.362, p.107667-107667, Article 107667

2024

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Dynamic basis for dA•dGTP and dA•d8OGTP misincorporation via Hoogsteen base pairs

Nature chemical biology, 2023-07, Vol.19 (7), p.900

2023

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2'-O-Methylation can increase the abundance and lifetime of alternative RNA conformational states

Nucleic acids research, 2020-12, Vol.48 (21), p.12365

2020

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A quantitative model predicts how m6A reshapes the kinetic landscape of nucleic acid hybridization and conformational transitions

Nature communications, 2021-08, Vol.12 (1), p.5201-5201, Article 5201

2021

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Mapping the per-residue surface electrostatic potential of CAPRIN1 along its phase-separation trajectory

Proceedings of the National Academy of Sciences - PNAS, 2022-09, Vol.119 (36), p.e2210492119-e2210492119

2022

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Surface electrostatics dictate RNA-binding protein CAPRIN1 condensate concentration and hydrodynamic properties

The Journal of biological chemistry, 2023-01, Vol.299 (1), p.102776-102776, Article 102776

2023

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Environmental Effects on Guanine-Thymine Mispair Tautomerization Explored with Quantum Mechanical/Molecular Mechanical Free Energy Simulations

Journal of the American Chemical Society, 2020-06, Vol.142 (25), p.11183-11191

2020

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NMR Chemical Exchange Measurements Reveal That N 6‑Methyladenosine Slows RNA Annealing

Journal of the American Chemical Society, 2019-12, Vol.141 (51), p.19988-19993

2019

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NMR measurements of transient low-populated tautomeric and anionic Watson-Crick-like G·T/U in RNA:DNA hybrids: implications for the fidelity of transcription and CRISPR/Cas9 gene editing

Nucleic acids research, 2024-03, Vol.52 (5), p.2672

2024

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Measurement of 1Hα transverse relaxation rates in proteins: application to solvent PREs

Journal of biomolecular NMR, 2022-08, Vol.76 (4), p.137-152

2022

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Sometimes pulses just have to be perfect – An example based on the measurement of amide proton transverse relaxation rates in proteins

Journal of magnetic resonance (1997), 2023-04, Vol.349, p.107412-107412, Article 107412

2023

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DNA mismatches reveal conformational penalties in protein-DNA recognition

Nature (London), 2020-11, Vol.587 (7833), p.291-296

2020

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Characterizing micro-to-millisecond chemical exchange in nucleic acids using off-resonance R1ρ relaxation dispersion

Progress in nuclear magnetic resonance spectroscopy, 2019-06, Vol.112-113, p.55-102

2019

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Nucleic Acid Conformational Penalties from Optical Melting Experiments

Biophysical journal, 2021-02, Vol.120 (3), p.220a-220a

2021

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The Dynamic Ensemble of A:G and A:8-Oxoguanine Mismatches in Duplex DNA: Implications for Replication Errors and Damage Repair

Biophysical journal, 2021-02, Vol.120 (3), p.219a-220a

2021

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Insights into Watson-Crick/Hoogsteen breathing dynamics and damage repair from the solution structure and dynamic ensemble of DNA duplexes containing m1A

Nucleic acids research, 2017-05, Vol.45 (9), p.5586

2017

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Characterizing micro-to-millisecond chemical exchange in nucleic acids using off-resonance R 1ρ relaxation dispersion

Progress in nuclear magnetic resonance spectroscopy, 2019-06, Vol.112-113, p.55

2019

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Extending the Sensitivity of CEST NMR Spectroscopy to Micro‐to‐Millisecond Dynamics in Nucleic Acids Using High‐Power Radio‐Frequency Fields

Angewandte Chemie (International ed.), 2020-07, Vol.59 (28), p.11262-11266

International ed. in English, 2020

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Measuring thermodynamic preferences to form non-native conformations in nucleic acids using ultraviolet melting

Proceedings of the National Academy of Sciences - PNAS, 2022-06, Vol.119 (24), p.e2112496119-e2112496119

2022

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Watson-Crick Like Mismatches in Replication Fidelity

Biophysical journal, 2019-02, Vol.116 (3), p.359a-359a

2019

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Visualizing Base Opening in Nucleic Acid Duplexes

Biophysical journal, 2019-02, Vol.116 (3), p.359a-359a

2019

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Probing the Hydrogen-Bonding Environment of Individual Bases in DNA Duplexes with Isotope-Edited Infrared Spectroscopy

The journal of physical chemistry. B, 2021-07, Vol.125 (28), p.7613-7627

2021

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Rapid and accurate determination of atomistic RNA dynamic ensemble models using NMR and structure prediction

High-performance virtual screening by targeting a high-resolution RNA dynamic ensemble

Practical considerations for the measurement of near-surface electrostatics based on solvent paramagnetic relaxation enhancements

A delayed decoupling methyl-TROSY pulse sequence for atomic resolution studies of folded proteins and RNAs in condensates

Dynamic basis for dA•dGTP and dA•d8OGTP misincorporation via Hoogsteen base pairs

2'-O-Methylation can increase the abundance and lifetime of alternative RNA conformational states

A quantitative model predicts how m6A reshapes the kinetic landscape of nucleic acid hybridization and conformational transitions

Mapping the per-residue surface electrostatic potential of CAPRIN1 along its phase-separation trajectory

Surface electrostatics dictate RNA-binding protein CAPRIN1 condensate concentration and hydrodynamic properties

Environmental Effects on Guanine-Thymine Mispair Tautomerization Explored with Quantum Mechanical/Molecular Mechanical Free Energy Simulations

NMR Chemical Exchange Measurements Reveal That N 6‑Methyladenosine Slows RNA Annealing

NMR measurements of transient low-populated tautomeric and anionic Watson-Crick-like G·T/U in RNA:DNA hybrids: implications for the fidelity of transcription and CRISPR/Cas9 gene editing

Measurement of 1Hα transverse relaxation rates in proteins: application to solvent PREs

Sometimes pulses just have to be perfect – An example based on the measurement of amide proton transverse relaxation rates in proteins

DNA mismatches reveal conformational penalties in protein-DNA recognition

Characterizing micro-to-millisecond chemical exchange in nucleic acids using off-resonance R1ρ relaxation dispersion

Nucleic Acid Conformational Penalties from Optical Melting Experiments

The Dynamic Ensemble of A:G and A:8-Oxoguanine Mismatches in Duplex DNA: Implications for Replication Errors and Damage Repair

Insights into Watson-Crick/Hoogsteen breathing dynamics and damage repair from the solution structure and dynamic ensemble of DNA duplexes containing m1A

Characterizing micro-to-millisecond chemical exchange in nucleic acids using off-resonance R 1ρ relaxation dispersion

Extending the Sensitivity of CEST NMR Spectroscopy to Micro‐to‐Millisecond Dynamics in Nucleic Acids Using High‐Power Radio‐Frequency Fields

Measuring thermodynamic preferences to form non-native conformations in nucleic acids using ultraviolet melting

Watson-Crick Like Mismatches in Replication Fidelity

Visualizing Base Opening in Nucleic Acid Duplexes

Probing the Hydrogen-Bonding Environment of Individual Bases in DNA Duplexes with Isotope-Edited Infrared Spectroscopy

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