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Assessing Protein Co-evolution in the Context of the Tree of Life Assists in the Prediction of the Interactome

Journal of molecular biology, 2005-09, Vol.352 (4), p.1002-1015

2005

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Oncogenic Signalling Networks and Polypharmacology as Paradigms to Cope with Cancer Heterogeneity

Current proteomics, 2014-10, Vol.11 (3), p.210-217

2014

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Exploiting protein structure data to explore the evolution of protein function and biological complexity

Philosophical transactions of the Royal Society of London. Series B. Biological sciences, 2006-03, Vol.361 (1467), p.425-440

2006

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Genetic signature detected in T cell receptors from patients with severe COVID-19

iScience, 2023-10, Vol.26 (10), p.107735-107735, Article 107735

2023

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Predicting protein function with hierarchical phylogenetic profiles: the Gene3D Phylo-Tuner method applied to eukaryotic genomes

PLoS computational biology, 2007-11, Vol.3 (11), p.e237-e237

2007

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Finding the "dark matter" in human and yeast protein network prediction and modelling

PLoS computational biology, 2010-09, Vol.6 (9), p.e1000945

2010

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Evolution of Protein Superfamilies and Bacterial Genome Size

Journal of molecular biology, 2004-02, Vol.336 (4), p.871-887

2004

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Protein residues determining interaction specificity in paralogous families

Bioinformatics, 2021-05, Vol.37 (8), p.1076-1082

2021

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Regulatory variants: from detection to predicting impact

Briefings in bioinformatics, 2019-09, Vol.20 (5), p.1639-1654

2019

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CoMent: Relationships Between Biomedical Concepts Inferred From the Scientific Literature

Journal of molecular biology, 2022-06, Vol.434 (11), p.167568-167568, Article 167568

2022

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Phenotype-genotype comorbidity analysis of patients with rare disorders provides insight into their pathological and molecular bases

PLoS genetics, 2020-10, Vol.16 (10), p.e1009054-e1009054

2020

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Transcriptomic analysis identifies dysregulated pathways and therapeutic targets in PMM2-CDG

Biochimica et biophysica acta. Molecular basis of disease, 2024-06, Vol.1870 (5), p.167163, Article 167163

2024

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Assigning protein function from domain-function associations using DomFun

BMC bioinformatics, 2022-01, Vol.23 (1), p.43-19, Article 43

2022

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Advancing in Schaaf-Yang syndrome pathophysiology: from bedside to subcellular analyses of truncated MAGEL2

Journal of medical genetics, 2023-04, Vol.60 (4), p.406-415

2023

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Integrating differential expression, co-expression and gene network analysis for the identification of common genes associated with tumor angiogenesis deregulation

Journal of biomedical informatics, 2023-08, Vol.144, p.104421-104421, Article 104421

2023

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CoMentG: comprehensive retrieval of generic relationships between biomedical concepts from the scientific literature

Database : the journal of biological databases and curation, 2024-04, Vol.2024

2024

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Gene expression analysis method integration and co-expression module detection applied to rare glucide metabolism disorders using ExpHunterSuite

Scientific reports, 2021-07, Vol.11 (1), p.1-12, Article 15062

2021

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Systematic identification of genetic systems associated with phenotypes in patients with rare genomic copy number variations

Human genetics, 2021-03, Vol.140 (3), p.457-475

2021

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Structural and Functional View of Polypharmacology

Scientific reports, 2017-08, Vol.7 (1), p.10102-10102, Article 10102

2017

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Exploring miRNA–target gene pair detection in disease with coRmiT

Briefings in bioinformatics, 2024-01, Vol.25 (2)

2024

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Bioinformatics Prediction for Network-Based Integrative Multi-Omics Expression Data Analysis in Hirschsprung Disease

Biomolecules (Basel, Switzerland), 2024-01, Vol.14 (2), p.164

2024

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Deepening the knowledge of rare diseases dependent on angiogenesis through semantic similarity clustering and network analysis

Briefings in bioinformatics, 2022-07, Vol.23 (4)

2022

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Biofilm formation displays intrinsic offensive and defensive features of Bacillus cereus

NPJ biofilms and microbiomes, 2020, Vol.6 (1), p.3-3, Article 3

2020

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Phenotype-loci associations in networks of patients with rare disorders: application to assist in the diagnosis of novel clinical cases

European journal of human genetics : EJHG, 2018-10, Vol.26 (10), p.1451-1461

2018

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Network-Based Methods for Approaching Human Pathologies from a Phenotypic Point of View

Genes, 2022-06, Vol.13 (6), p.1081

2022

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Assessing Protein Co-evolution in the Context of the Tree of Life Assists in the Prediction of the Interactome

Oncogenic Signalling Networks and Polypharmacology as Paradigms to Cope with Cancer Heterogeneity

Exploiting protein structure data to explore the evolution of protein function and biological complexity

Genetic signature detected in T cell receptors from patients with severe COVID-19

Predicting protein function with hierarchical phylogenetic profiles: the Gene3D Phylo-Tuner method applied to eukaryotic genomes

Finding the "dark matter" in human and yeast protein network prediction and modelling

Evolution of Protein Superfamilies and Bacterial Genome Size

Protein residues determining interaction specificity in paralogous families

Regulatory variants: from detection to predicting impact

CoMent: Relationships Between Biomedical Concepts Inferred From the Scientific Literature

Phenotype-genotype comorbidity analysis of patients with rare disorders provides insight into their pathological and molecular bases

Transcriptomic analysis identifies dysregulated pathways and therapeutic targets in PMM2-CDG

Assigning protein function from domain-function associations using DomFun

Advancing in Schaaf-Yang syndrome pathophysiology: from bedside to subcellular analyses of truncated MAGEL2

Integrating differential expression, co-expression and gene network analysis for the identification of common genes associated with tumor angiogenesis deregulation

CoMentG: comprehensive retrieval of generic relationships between biomedical concepts from the scientific literature

Gene expression analysis method integration and co-expression module detection applied to rare glucide metabolism disorders using ExpHunterSuite

Systematic identification of genetic systems associated with phenotypes in patients with rare genomic copy number variations

Structural and Functional View of Polypharmacology

Exploring miRNA–target gene pair detection in disease with coRmiT

Bioinformatics Prediction for Network-Based Integrative Multi-Omics Expression Data Analysis in Hirschsprung Disease

Deepening the knowledge of rare diseases dependent on angiogenesis through semantic similarity clustering and network analysis

Biofilm formation displays intrinsic offensive and defensive features of Bacillus cereus

Phenotype-loci associations in networks of patients with rare disorders: application to assist in the diagnosis of novel clinical cases

Network-Based Methods for Approaching Human Pathologies from a Phenotypic Point of View

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