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Phenotype-genotype comorbidity analysis of patients with rare disorders provides insight into their pathological and molecular bases

PLoS genetics, 2020-10, Vol.16 (10), p.e1009054-e1009054

2020

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Cytokine profiling and transcriptomics in mononuclear cells define immune variants in Meniere Disease

Genes and immunity, 2024-04, Vol.25 (2), p.124-131

2024

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Assigning protein function from domain-function associations using DomFun

BMC bioinformatics, 2022-01, Vol.23 (1), p.43-19, Article 43

2022

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Systematic identification of genetic systems associated with phenotypes in patients with rare genomic copy number variations

Human genetics, 2021-03, Vol.140 (3), p.457-475

2021

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Structural and Functional View of Polypharmacology

Scientific reports, 2017-08, Vol.7 (1), p.10102-10102, Article 10102

2017

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Bioinformatics Prediction for Network-Based Integrative Multi-Omics Expression Data Analysis in Hirschsprung Disease

Biomolecules (Basel, Switzerland), 2024-01, Vol.14 (2), p.164

2024

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Network-Based Methods for Approaching Human Pathologies from a Phenotypic Point of View

Genes, 2022-06, Vol.13 (6), p.1081

2022

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Biofilm formation displays intrinsic offensive and defensive features of Bacillus cereus

NPJ biofilms and microbiomes, 2020, Vol.6 (1), p.3-3, Article 3

2020

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Gene expression analysis method integration and co-expression module detection applied to rare glucide metabolism disorders using ExpHunterSuite

Scientific reports, 2021-07, Vol.11 (1), p.1-12, Article 15062

2021

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Applications of molecular networks in biomedicine

Biology methods and protocols, 2019-01, Vol.4 (1), p.bpz012-bpz012

2019

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Global analysis of the human pathophenotypic similarity gene network merges disease module components

PloS one, 2013-02, Vol.8 (2), p.e56653-e56653

2013

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Integration of biological data by kernels on graph nodes allows prediction of new genes involved in mitotic chromosome condensation

Molecular biology of the cell, 2014-08, Vol.25 (16), p.2522-2536

2014

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Evolutionary expansion of the Ras switch regulatory module in eukaryotes

Nucleic acids research, 2011-07, Vol.39 (13), p.5526

2011

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Predicting protein function with hierarchical phylogenetic profiles: the Gene3D Phylo-Tuner method applied to eukaryotic genomes

PLoS computational biology, 2007-11, Vol.3 (11), p.e237-e237

2007

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Regulation and directed inhibition of ECP production by human neutrophils

Frontiers in immunology, 2022-11, Vol.13, p.1015529

2022

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Systematic identification of phenotypically enriched loci using a patient network of genomic disorders

BMC genomics, 2016-03, Vol.17 (235), p.232-232, Article 232

2016

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Protein residues determining interaction specificity in paralogous families

Bioinformatics, 2021-05, Vol.37 (8), p.1076-1082

2021

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Bone metabolism and inflammatory biomarkers in radiographic and non-radiographic axial spondyloarthritis patients: a comprehensive evaluation

Frontiers in endocrinology (Lausanne), 2024-02, Vol.15, p.1227196-1227196

2024

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Regulatory variants: from detection to predicting impact

Briefings in bioinformatics, 2019-09, Vol.20 (5), p.1639-1654

2019

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Protein superfamily evolution and the last universal common ancestor (LUCA)

Journal of molecular evolution, 2006-10, Vol.63 (4), p.513-525

2006

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CoMent: Relationships Between Biomedical Concepts Inferred From the Scientific Literature

Journal of molecular biology, 2022-06, Vol.434 (11), p.167568-167568, Article 167568

2022

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Identification of New Toxicity Mechanisms in Drug-Induced Liver Injury through Systems Pharmacology

Genes, 2022-07, Vol.13 (7), p.1292

2022

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Erratum to: How can functional annotations be derived from profiles of phenotypic annotations?

BMC bioinformatics, 2017-03, Vol.18 (1), p.194-194, Article 194

2017

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Uncovering the molecular machinery of the human spindle--an integration of wet and dry systems biology

PloS one, 2012-03, Vol.7 (3), p.e31813-e31813

2012

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Phenotype-genotype comorbidity analysis of patients with rare disorders provides insight into their pathological and molecular bases

Cytokine profiling and transcriptomics in mononuclear cells define immune variants in Meniere Disease

Assigning protein function from domain-function associations using DomFun

Systematic identification of genetic systems associated with phenotypes in patients with rare genomic copy number variations

Structural and Functional View of Polypharmacology

Bioinformatics Prediction for Network-Based Integrative Multi-Omics Expression Data Analysis in Hirschsprung Disease

Network-Based Methods for Approaching Human Pathologies from a Phenotypic Point of View

Biofilm formation displays intrinsic offensive and defensive features of Bacillus cereus

Gene expression analysis method integration and co-expression module detection applied to rare glucide metabolism disorders using ExpHunterSuite

Applications of molecular networks in biomedicine

Global analysis of the human pathophenotypic similarity gene network merges disease module components

Integration of biological data by kernels on graph nodes allows prediction of new genes involved in mitotic chromosome condensation

Evolutionary expansion of the Ras switch regulatory module in eukaryotes

Predicting protein function with hierarchical phylogenetic profiles: the Gene3D Phylo-Tuner method applied to eukaryotic genomes

Regulation and directed inhibition of ECP production by human neutrophils

Systematic identification of phenotypically enriched loci using a patient network of genomic disorders

Protein residues determining interaction specificity in paralogous families

Bone metabolism and inflammatory biomarkers in radiographic and non-radiographic axial spondyloarthritis patients: a comprehensive evaluation

Regulatory variants: from detection to predicting impact

Protein superfamily evolution and the last universal common ancestor (LUCA)

Multi-Omics Approach Reveals Prebiotic and Potential Antioxidant Effects of Essential Oils from the Mediterranean Diet on Cardiometabolic Disorder Using Humanized Gnotobiotic Mice

CoMent: Relationships Between Biomedical Concepts Inferred From the Scientific Literature

Identification of New Toxicity Mechanisms in Drug-Induced Liver Injury through Systems Pharmacology

Erratum to: How can functional annotations be derived from profiles of phenotypic annotations?

Uncovering the molecular machinery of the human spindle--an integration of wet and dry systems biology

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