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Impact of transposable elements on genome structure and evolution in bread wheat

Genome Biology, 2018-08, Vol.19 (1), p.103-18, Article 103

2018

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Field pathogenomics reveals the emergence of a diverse wheat yellow rust population

Genome Biology, 2015-02, Vol.16 (1), p.23-23, Article 23

2015

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Optimizing Rhizobium- legume symbioses by simultaneous measurement of rhizobial competitiveness and N 2 fixation in nodules

Proceedings of the National Academy of Sciences - PNAS, 2020-05, Vol.117 (18), p.9822-9831

2020

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RNA‐Seq bulked segregant analysis enables the identification of high‐resolution genetic markers for breeding in hexaploid wheat

Plant biotechnology journal, 2015-06, Vol.13 (5), p.613-624

2015

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A complex receptor locus confers responsiveness to necrosis and ethylene‐inducing like peptides in Brassica napus

The Plant journal : for cell and molecular biology, 2024-07, Vol.119 (1), p.266-282

2024

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Uncovering hidden variation in polyploid wheat

Proceedings of the National Academy of Sciences - PNAS, 2017-02, Vol.114 (6), p.E913-E921

2017

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Speed breeding in growth chambers and glasshouses for crop breeding and model plant research

Nature protocols, 2018-12, Vol.13 (12), p.2944-2963

2018

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The NLR-Annotator Tool Enables Annotation of the Intracellular Immune Receptor Repertoire

Plant physiology (Bethesda), 2020-06, Vol.183 (2), p.468-482

2020

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expVIP: a Customizable RNA-seq Data Analysis and Visualization Platform

Plant physiology (Bethesda), 2016-04, Vol.170 (4), p.2172-2186

2016

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Sequencing quality assessment tools to enable data-driven informatics for high throughput genomics

Frontiers in genetics, 2013-12, Vol.4, p.288-288

2013

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Pathogen-induced biosynthetic pathways encode defense-related molecules in bread wheat

Proceedings of the National Academy of Sciences - PNAS, 2022-04, Vol.119 (16), p.e2123299119

2022

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Hotspots in the genomic architecture of field drought responses in wheat as breeding targets

Functional & integrative genomics, 2019-03, Vol.19 (2), p.295-309

2019

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Genome-Wide Transcription During Early Wheat Meiosis Is Independent of Synapsis, Ploidy Level, and the Ph1 Locus

Frontiers in plant science, 2018-12, Vol.9, p.1791-1791

2018

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PolyMarker: A fast polyploid primer design pipeline

Bioinformatics (Oxford, England), 2015-06, Vol.31 (12), p.2038-2039

2015

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Host Subtraction, Filtering and Assembly Validations for Novel Viral Discovery Using Next Generation Sequencing Data

PloS one, 2015-06, Vol.10 (6), p.e0129059-e0129059

2015

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Evolution of an Eurasian avian-like influenza virus in naïve and vaccinated pigs

PLoS pathogens, 2012-05, Vol.8 (5), p.e1002730-e1002730

2012

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A haplotype-led approach to increase the precision of wheat breeding

Communications biology, 2020-11, Vol.3 (1), p.712-11, Article 712

2020

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Bio-samtools: Ruby bindings for SAMtools, a library for accessing BAM files containing high-throughput sequence alignments

Source code for biology and medicine, 2012-05, Vol.7 (1), p.6-6, Article 6

2012

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An online database for einkorn wheat to aid in gene discovery and functional genomics studies

Database : the journal of biological databases and curation, 2023-11, Vol.2023

2023

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A Co-Expression Network in Hexaploid Wheat Reveals Mostly Balanced Expression and Lack of Significant Gene Loss of Homeologous Meiotic Genes Upon Polyploidization

Frontiers in plant science, 2019-10, Vol.10, p.1325-1325

2019

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bio-samtools 2: a package for analysis and visualization of sequence and alignment data with SAMtools in Ruby

Bioinformatics, 2015-08, Vol.31 (15), p.2565-2567

2015

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Identifying and classifying trait linked polymorphisms in non-reference species by walking coloured de bruijn graphs

PloS one, 2013-03, Vol.8 (3), p.e60058-e60058

2013

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Genome sequence and genetic diversity of European ash trees

Nature (London), 2017-01, Vol.541 (7636), p.212-216

2017

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Einkorn genomics sheds light on history of the oldest domesticated wheat

Nature (London), 2023-08, Vol.620 (7975), p.830-838

2023

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A carbohydrate-binding protein, B-GRANULE CONTENT 1, influences starch granule size distribution in a dose-dependent manner in polyploid wheat

Journal of experimental botany, 2020-01, Vol.71 (1), p.105-115

2020

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Impact of transposable elements on genome structure and evolution in bread wheat

Field pathogenomics reveals the emergence of a diverse wheat yellow rust population

Optimizing Rhizobium- legume symbioses by simultaneous measurement of rhizobial competitiveness and N 2 fixation in nodules

RNA‐Seq bulked segregant analysis enables the identification of high‐resolution genetic markers for breeding in hexaploid wheat

A complex receptor locus confers responsiveness to necrosis and ethylene‐inducing like peptides in Brassica napus

Uncovering hidden variation in polyploid wheat

Speed breeding in growth chambers and glasshouses for crop breeding and model plant research

The NLR-Annotator Tool Enables Annotation of the Intracellular Immune Receptor Repertoire

expVIP: a Customizable RNA-seq Data Analysis and Visualization Platform

Sequencing quality assessment tools to enable data-driven informatics for high throughput genomics

Pathogen-induced biosynthetic pathways encode defense-related molecules in bread wheat

Hotspots in the genomic architecture of field drought responses in wheat as breeding targets

Genome-Wide Transcription During Early Wheat Meiosis Is Independent of Synapsis, Ploidy Level, and the Ph1 Locus

PolyMarker: A fast polyploid primer design pipeline

Host Subtraction, Filtering and Assembly Validations for Novel Viral Discovery Using Next Generation Sequencing Data

Evolution of an Eurasian avian-like influenza virus in naïve and vaccinated pigs

A haplotype-led approach to increase the precision of wheat breeding

Bio-samtools: Ruby bindings for SAMtools, a library for accessing BAM files containing high-throughput sequence alignments

An online database for einkorn wheat to aid in gene discovery and functional genomics studies

A Co-Expression Network in Hexaploid Wheat Reveals Mostly Balanced Expression and Lack of Significant Gene Loss of Homeologous Meiotic Genes Upon Polyploidization

bio-samtools 2: a package for analysis and visualization of sequence and alignment data with SAMtools in Ruby

Identifying and classifying trait linked polymorphisms in non-reference species by walking coloured de bruijn graphs

Genome sequence and genetic diversity of European ash trees

Einkorn genomics sheds light on history of the oldest domesticated wheat

A carbohydrate-binding protein, B-GRANULE CONTENT 1, influences starch granule size distribution in a dose-dependent manner in polyploid wheat

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