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Machine learning workflow to enhance predictions of Adverse Drug Reactions (ADRs) through drug-gene interactions: application to drugs for cutaneous diseases

Scientific reports, 2017-06, Vol.7 (1), p.3690-11, Article 3690

2017

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Integrated Approaches to Identify miRNA Biomarkers Associated with Cognitive Dysfunction in Multiple Sclerosis Using Text Mining, Gene Expression, Pathways, and GWAS

Diagnostics (Basel), 2022-08, Vol.12 (8), p.1914

2022

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Drug Repurposing Prediction for Immune-Mediated Cutaneous Diseases using a Word-Embedding–Based Machine Learning Approach

Journal of investigative dermatology, 2019-03, Vol.139 (3), p.683-691

2019

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Serial KinderMiner (SKiM) discovers and annotates biomedical knowledge using co-occurrence and transformer models

BMC bioinformatics, 2023-11, Vol.24 (1), p.412-412, Article 412

2023

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Fungal Siderophores: From Mineral―Microbe Interactions to Anti-Pathogenicity

1, 2021

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Biomedical Literature Mining for Repurposing Laboratory Tests

Methods in molecular biology (Clifton, N.J.), 2022, Vol.2496, p.91

2022

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Comorbidity-Guided Text Mining and Omics Pipeline to Identify Candidate Genes and Drugs for Alzheimer's Disease

Genes, 2024-05, Vol.15 (5), p.614

2024

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Agile text mining for the 2014 i2b2/UTHealth Cardiac risk factors challenge

Journal of biomedical informatics, 2015-12, Vol.58, p.S120-S127

2015

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ProNormz – An integrated approach for human proteins and protein kinases normalization

Journal of biomedical informatics, 2014-02, Vol.47, p.131-138

2014

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Large Language Models and Genomics for Summarizing the Role of microRNA in Regulating mRNA Expression

Biomedicines, 2024-07, Vol.12 (7), p.1535

2024

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A haplotype-resolved genome assembly of the Nile rat facilitates exploration of the genetic basis of diabetes

BMC biology, 2022-11, Vol.20 (1), p.1-21, Article 245

2022

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A Review of Recent Advancement in Integrating Omics Data with Literature Mining towards Biomedical Discoveries

International journal of genomics, 2017-01, Vol.2017 (2017), p.1-10

2017

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Integrative Approach to Reveal Cell Type Specificity and Gene Candidates for Psoriatic Arthritis Outside the MHC

Frontiers in genetics, 2019-04, Vol.10, p.304-304

2019

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Mining protein phosphorylation information from biomedical literature using NLP parsing and Support Vector Machines

Computer methods and programs in biomedicine, 2018-07, Vol.160, p.57-64

2018

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Towards precise PICO extraction from abstracts of randomized controlled trials using a section-specific learning approach

Bioinformatics (Oxford, England), 2023-09, Vol.39 (9)

2023

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Ultrasonographic delineation of a foreign body in the calf

Journal of emergencies, trauma and shock, 2013-10, Vol.6 (4), p.307-308

2013

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Atopic Dermatitis Is an IL-13–Dominant Disease with Greater Molecular Heterogeneity Compared to Psoriasis

Journal of investigative dermatology, 2019-07, Vol.139 (7), p.1480-1489

2019

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Fungal Siderophores: From MineralMicrobe Interactions to Anti-Pathogenicity

1st Edition 2021, 2021

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PPInterFinder--a mining tool for extracting causal relations on human proteins from literature

Database : the journal of biological databases and curation, 2013, Vol.2013, p.bas052-bas052

2013

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Caenorhabditis elegans as a possible model to screen anti-Alzheimer's therapeutics

Journal of pharmacological and toxicological methods, 2020-11, Vol.106, p.106932-106932, Article 106932

2020

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Advancement in predicting interactions between drugs used to treat psoriasis and its comorbidities by integrating molecular and clinical resources

Journal of the American Medical Informatics Association : JAMIA, 2021-06, Vol.28 (6), p.1159-1167

2021

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Advancing entity recognition in biomedicine via instruction tuning of large language models

Bioinformatics (Oxford, England), 2024-03, Vol.40 (4)

2024

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Automated Extraction and Visualization of Protein-Protein Interaction Networks and Beyond: A Text-Mining Protocol

Methods in molecular biology (Clifton, N.J.), 2020-01, Vol.2074, p.13

2020

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Hypersensitive IFN Responses in Lupus Keratinocytes Reveal Key Mechanistic Determinants in Cutaneous Lupus

The Journal of immunology (1950), 2019-04, Vol.202 (7), p.2121-2130

2019

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Classification of clinically useful sentences in clinical evidence resources

Journal of biomedical informatics, 2016-04, Vol.60, p.14-22

2016

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Machine learning workflow to enhance predictions of Adverse Drug Reactions (ADRs) through drug-gene interactions: application to drugs for cutaneous diseases

Integrated Approaches to Identify miRNA Biomarkers Associated with Cognitive Dysfunction in Multiple Sclerosis Using Text Mining, Gene Expression, Pathways, and GWAS

Drug Repurposing Prediction for Immune-Mediated Cutaneous Diseases using a Word-Embedding–Based Machine Learning Approach

Serial KinderMiner (SKiM) discovers and annotates biomedical knowledge using co-occurrence and transformer models

Fungal Siderophores: From Mineral―Microbe Interactions to Anti-Pathogenicity

Biomedical Literature Mining for Repurposing Laboratory Tests

Comorbidity-Guided Text Mining and Omics Pipeline to Identify Candidate Genes and Drugs for Alzheimer's Disease

Agile text mining for the 2014 i2b2/UTHealth Cardiac risk factors challenge

ProNormz – An integrated approach for human proteins and protein kinases normalization

Large Language Models and Genomics for Summarizing the Role of microRNA in Regulating mRNA Expression

A haplotype-resolved genome assembly of the Nile rat facilitates exploration of the genetic basis of diabetes

A Review of Recent Advancement in Integrating Omics Data with Literature Mining towards Biomedical Discoveries

Integrative Approach to Reveal Cell Type Specificity and Gene Candidates for Psoriatic Arthritis Outside the MHC

Mining protein phosphorylation information from biomedical literature using NLP parsing and Support Vector Machines

Towards precise PICO extraction from abstracts of randomized controlled trials using a section-specific learning approach

Ultrasonographic delineation of a foreign body in the calf

Atopic Dermatitis Is an IL-13–Dominant Disease with Greater Molecular Heterogeneity Compared to Psoriasis

Fungal Siderophores: From MineralMicrobe Interactions to Anti-Pathogenicity

PPInterFinder--a mining tool for extracting causal relations on human proteins from literature

Caenorhabditis elegans as a possible model to screen anti-Alzheimer's therapeutics

Advancement in predicting interactions between drugs used to treat psoriasis and its comorbidities by integrating molecular and clinical resources

Advancing entity recognition in biomedicine via instruction tuning of large language models

Automated Extraction and Visualization of Protein-Protein Interaction Networks and Beyond: A Text-Mining Protocol

Hypersensitive IFN Responses in Lupus Keratinocytes Reveal Key Mechanistic Determinants in Cutaneous Lupus

Classification of clinically useful sentences in clinical evidence resources

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