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Transcription-induced supercoiling as the driving force of chromatin loop extrusion during formation of TADs in interphase chromosomes

Nucleic acids research, 2018-02, Vol.46 (4), p.1648

2018

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Segregation of semiflexible macromolecules in nanochannel

The Journal of chemical physics, 2013-05, Vol.138 (18), p.184904-184904

2013

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Chromatin Loop Extrusion and Chromatin Unknotting

Polymers, 2018-10, Vol.10 (10), p.1126

2018

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Arm retraction and escape transition in semi-flexible star polymer under cylindrical confinement

Journal of molecular modeling, 2015-07, Vol.21 (7), p.186-186, Article 186

2015

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A Computational Model for Nano Scale Cavities in the Atomic Structure of Polymer Melt and Comparisons to PALS

Materials science forum, 2011, Vol.666, p.15-20

Račko, Dušan

2011

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Nanocomposite photoactuators based on an ethylene vinyl acetate copolymer filled with carbon nanotubes

Sensors and actuators. B, Chemical, 2013-09, Vol.186, p.701-710

2013

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The free-volume structure of a polymer melt, poly(vinyl methylether)from molecular dynamics simulations and cavity analysis

The Journal of chemical physics, 2009-08, Vol.131 (6), p.064903-064903-10

2009

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The Free Volume Dynamics

Materials science forum, 2013, Vol.733, p.33-37

2013

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Are TADs supercoiled?

Nucleic acids research, 2019-01, Vol.47 (2), p.521

2019

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The free volume of poly(vinyl methylether) as computed in a wide temperature range and at length scales up to the nanoregion

The Journal of chemical physics, 2011-01, Vol.134 (4), p.044512-044512-14

2011

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Glucose diffusivity and porosity in silica hydrogel based on organofunctional silanes

European polymer journal, 2011-07, Vol.47 (7), p.1477-1484

2011

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Transcription-induced supercoiling explains formation of self-interacting chromatin domains in S. pombe

Nucleic acids research, 2017-09, Vol.45 (17), p.9850

2017

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Generation of supercoils in nicked and gapped DNA drives DNA unknotting and postreplicative decatenation

Nucleic acids research, 2015-09, Vol.43 (15), p.7229

2015

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Free Volume in a PVME Polymer–Water Solution

Macromolecules, 2020-06, Vol.53 (12), p.4770-4782

2020

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Effects of physiological self-crowding of DNA on shape and biological properties of DNA molecules with various levels of supercoiling

Nucleic acids research, 2015-02, Vol.43 (4), p.2390

2015

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Mechanical properties of silica hydrogels prepared and aged at physiological conditions: testing in the compression mode

Journal of sol-gel science and technology, 2010, Vol.53 (1), p.107-114

2010

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Molecular Dynamics Simulation of Supercoiled, Knotted, and Catenated DNA Molecules, Including Modeling of Action of DNA Gyrase

Methods in molecular biology (Clifton, N.J.), 2017, Vol.1624, p.339

2017

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How topoisomerase IV can efficiently unknot and decatenate negatively supercoiled DNA molecules without causing their torsional relaxation

Nucleic acids research, 2016-06, Vol.44 (10), p.4528

2016

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Knot Formation on DNA Pushed Inside Chiral Nanochannels

Polymers, 2023-10, Vol.15 (20), p.4185

2023

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Knot Factories with Helical Geometry Enhance Knotting and Induce Handedness to Knots

Polymers, 2022-10, Vol.14 (19), p.4201

2022

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Channels with Helical Modulation Display Stereospecific Sensitivity for Chiral Superstructures

Polymers, 2021-10, Vol.13 (21), p.3726

2021

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Entropic Competition between Supercoiled and Torsionally Relaxed Chromatin Fibers Drives Loop Extrusion through Pseudo-Topologically Bound Cohesin

Biology (Basel, Switzerland), 2021-02, Vol.10 (2), p.130

2021

Volltextzugriff (PDF)

Fluorescence study of the dynamics of a star-shaped poly(ɛ-caprolactone)s in THF: A comparison with a star-shaped poly(l-lactide)s

Polymer (Guilford), 2009-05, Vol.50 (10), p.2209-2219

2009

Volltextzugriff (PDF)

Spectral characteristics of carbonyl substituted 2,2′-bithiophenes in polymer matrices and low polar solvents

Photochemical & photobiological sciences, 2013-07, Vol.12 (7), p.1210-1219

2013

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Free volume from molecular dynamics simulations and its relationships to the positron annihilation lifetime spectroscopy

Theoretical chemistry accounts, 2007-08, Vol.118 (2), p.443-448

2007

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Transcription-induced supercoiling as the driving force of chromatin loop extrusion during formation of TADs in interphase chromosomes

Segregation of semiflexible macromolecules in nanochannel

Chromatin Loop Extrusion and Chromatin Unknotting

Arm retraction and escape transition in semi-flexible star polymer under cylindrical confinement

A Computational Model for Nano Scale Cavities in the Atomic Structure of Polymer Melt and Comparisons to PALS

Nanocomposite photoactuators based on an ethylene vinyl acetate copolymer filled with carbon nanotubes

The free-volume structure of a polymer melt, poly(vinyl methylether)from molecular dynamics simulations and cavity analysis

The Free Volume Dynamics

Are TADs supercoiled?

The free volume of poly(vinyl methylether) as computed in a wide temperature range and at length scales up to the nanoregion

Glucose diffusivity and porosity in silica hydrogel based on organofunctional silanes

Transcription-induced supercoiling explains formation of self-interacting chromatin domains in S. pombe

Generation of supercoils in nicked and gapped DNA drives DNA unknotting and postreplicative decatenation

Free Volume in a PVME Polymer–Water Solution

Effects of physiological self-crowding of DNA on shape and biological properties of DNA molecules with various levels of supercoiling

Mechanical properties of silica hydrogels prepared and aged at physiological conditions: testing in the compression mode

Molecular Dynamics Simulation of Supercoiled, Knotted, and Catenated DNA Molecules, Including Modeling of Action of DNA Gyrase

How topoisomerase IV can efficiently unknot and decatenate negatively supercoiled DNA molecules without causing their torsional relaxation

Knot Formation on DNA Pushed Inside Chiral Nanochannels

Knot Factories with Helical Geometry Enhance Knotting and Induce Handedness to Knots

Channels with Helical Modulation Display Stereospecific Sensitivity for Chiral Superstructures

Entropic Competition between Supercoiled and Torsionally Relaxed Chromatin Fibers Drives Loop Extrusion through Pseudo-Topologically Bound Cohesin

Fluorescence study of the dynamics of a star-shaped poly(ɛ-caprolactone)s in THF: A comparison with a star-shaped poly(l-lactide)s

Spectral characteristics of carbonyl substituted 2,2′-bithiophenes in polymer matrices and low polar solvents

Free volume from molecular dynamics simulations and its relationships to the positron annihilation lifetime spectroscopy

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