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Genotyping technologies for genetic research

Annual review of genomics and human genetics, 2009-09, Vol.10 (1), p.117-133

Ragoussis, Jiannis

2009

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Single-nucleus transcriptomics of the prefrontal cortex in major depressive disorder implicates oligodendrocyte precursor cells and excitatory neurons

Nature neuroscience, 2020-06, Vol.23 (6), p.771

2020

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Single-cell RNA-seq reveals that glioblastoma recapitulates a normal neurodevelopmental hierarchy

Nature communications, 2020-07, Vol.11 (1), p.3406-19, Article 3406

2020

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Single-cell RNA sequencing reveals time- and sex-specific responses of mouse spinal cord microglia to peripheral nerve injury and links ApoE to chronic pain

Nature communications, 2022-02, Vol.13 (1), p.843-843, Article 843

2022

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High-resolution genome-wide mapping of HIF-binding sites by ChIP-seq

Blood, 2011-06, Vol.117 (23), p.e207-e217

2011

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Benchmarking of the Oxford Nanopore MinION sequencing for quantitative and qualitative assessment of cDNA populations

Scientific reports, 2016-08, Vol.6 (1), p.31602, Article 31602

2016

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Model-based analysis of sample index hopping reveals its widespread artifacts in multiplexed single-cell RNA-sequencing

Nature communications, 2020-06, Vol.11 (1), p.2704-2704, Article 2704

2020

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A coordinated progression of progenitor cell states initiates urinary tract development

Nature communications, 2021-05, Vol.12 (1), p.2627-2627, Article 2627

2021

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Single-Cell RNA-Seq Analysis of Cells from Degenerating and Non-Degenerating Intervertebral Discs from the Same Individual Reveals New Biomarkers for Intervertebral Disc Degeneration

International journal of molecular sciences, 2022-04, Vol.23 (7), p.3993

2022

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A large fraction of extragenic RNA pol II transcription sites overlap enhancers

PLoS biology, 2010-05, Vol.8 (5), p.e1000384-e1000384

2010

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Methodologies for Transcript Profiling Using Long-Read Technologies

Frontiers in genetics, 2020-07, Vol.11, p.606-606

2020

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Direct targeting of Sec23a by miR-200s influences cancer cell secretome and promotes metastatic colonization

Nature medicine, 2011-09, Vol.17 (9), p.1101-1108

2011

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microRNA-Associated Progression Pathways and Potential Therapeutic Targets Identified by Integrated mRNA and microRNA Expression Profiling in Breast Cancer

Cancer research (Chicago, Ill.), 2011-09, Vol.71 (17), p.5635-5645

2011

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Direct reprogramming of fibroblasts into endothelial cells capable of angiogenesis and reendothelialization in tissue-engineered vessels

Proceedings of the National Academy of Sciences - PNAS, 2012-08, Vol.109 (34), p.13793-13798

2012

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Identification and Characterization of Enhancers Controlling the Inflammatory Gene Expression Program in Macrophages

Immunity (Cambridge, Mass.), 2010-03, Vol.32 (3), p.317-328

2010

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QuantiSNP: an Objective Bayes Hidden-Markov Model to detect and accurately map copy number variation using SNP genotyping data

Nucleic acids research, 2007-03, Vol.35 (6), p.2013

2007

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hsa-miR-210 Is Induced by Hypoxia and Is an Independent Prognostic Factor in Breast Cancer

Clinical cancer research, 2008-03, Vol.14 (5), p.1340-1348

2008

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Estrogen receptor-α directly regulates the hypoxia-inducible factor 1 pathway associated with antiestrogen response in breast cancer

Proceedings of the National Academy of Sciences - PNAS, 2015-12, Vol.112 (49), p.15172-15177

2015

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Improved Nanopore full-length cDNA sequencing by PCR-suppression

Frontiers in genetics, 2022-10, Vol.13, p.1031355-1031355

2022

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The mevalonate precursor enzyme HMGCS1 is a novel marker and key mediator of cancer stem cell enrichment in luminal and basal models of breast cancer

PloS one, 2020-07, Vol.15 (7), p.e0236187-e0236187

2020

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Global long non-coding RNA expression in the rostral anterior cingulate cortex of depressed suicides

Translational psychiatry, 2018-10, Vol.8 (1), p.224-13, Article 224

2018

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Transcriptional reprogramming of skeletal muscle stem cells by the niche environment

Nature communications, 2023-02, Vol.14 (1), p.535-535, Article 535

2023

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MicroRNA-210 regulates mitochondrial free radical response to hypoxia and krebs cycle in cancer cells by targeting iron sulfur cluster protein ISCU

PloS one, 2010-04, Vol.5 (4), p.e10345-e10345

2010

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Molecular characterization of DICER1-mutated pituitary blastoma

Acta neuropathologica, 2021-06, Vol.141 (6), p.929-944

2021

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Genotyping technologies for genetic research

Single-nucleus transcriptomics of the prefrontal cortex in major depressive disorder implicates oligodendrocyte precursor cells and excitatory neurons

Single-cell RNA-seq reveals that glioblastoma recapitulates a normal neurodevelopmental hierarchy

Single-cell RNA sequencing reveals time- and sex-specific responses of mouse spinal cord microglia to peripheral nerve injury and links ApoE to chronic pain

High-resolution genome-wide mapping of HIF-binding sites by ChIP-seq

Benchmarking of the Oxford Nanopore MinION sequencing for quantitative and qualitative assessment of cDNA populations

Model-based analysis of sample index hopping reveals its widespread artifacts in multiplexed single-cell RNA-sequencing

A coordinated progression of progenitor cell states initiates urinary tract development

Single-Cell RNA-Seq Analysis of Cells from Degenerating and Non-Degenerating Intervertebral Discs from the Same Individual Reveals New Biomarkers for Intervertebral Disc Degeneration

A large fraction of extragenic RNA pol II transcription sites overlap enhancers

Methodologies for Transcript Profiling Using Long-Read Technologies

Direct targeting of Sec23a by miR-200s influences cancer cell secretome and promotes metastatic colonization

microRNA-Associated Progression Pathways and Potential Therapeutic Targets Identified by Integrated mRNA and microRNA Expression Profiling in Breast Cancer

Direct reprogramming of fibroblasts into endothelial cells capable of angiogenesis and reendothelialization in tissue-engineered vessels

Identification and Characterization of Enhancers Controlling the Inflammatory Gene Expression Program in Macrophages

QuantiSNP: an Objective Bayes Hidden-Markov Model to detect and accurately map copy number variation using SNP genotyping data

hsa-miR-210 Is Induced by Hypoxia and Is an Independent Prognostic Factor in Breast Cancer

Estrogen receptor-α directly regulates the hypoxia-inducible factor 1 pathway associated with antiestrogen response in breast cancer

Improved Nanopore full-length cDNA sequencing by PCR-suppression

Regulation of cellular sterol homeostasis by the oxygen responsive noncoding RNA lincNORS

The mevalonate precursor enzyme HMGCS1 is a novel marker and key mediator of cancer stem cell enrichment in luminal and basal models of breast cancer

Global long non-coding RNA expression in the rostral anterior cingulate cortex of depressed suicides

Transcriptional reprogramming of skeletal muscle stem cells by the niche environment

MicroRNA-210 regulates mitochondrial free radical response to hypoxia and krebs cycle in cancer cells by targeting iron sulfur cluster protein ISCU

Molecular characterization of DICER1-mutated pituitary blastoma

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