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The benefits and pitfalls of machine learning for biomarker discovery

Cell and tissue research, 2023-10, Vol.394 (1), p.17-31

2023

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Ethnic differences in early onset multimorbidity and associations with health service use, long-term prescribing, years of life lost, and mortality: A cross-sectional study using clustering in the UK Clinical Practice Research Datalink

PLoS medicine, 2023-10, Vol.20 (10), p.e1004300-e1004300

2023

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Spectrum: fast density-aware spectral clustering for single and multi-omic data

Bioinformatics, 2020-02, Vol.36 (4), p.1159-1166

2020

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Signatures of inflammation and impending multiple organ dysfunction in the hyperacute phase of trauma: A prospective cohort study

PLoS medicine, 2017-07, Vol.14 (7), p.e1002352-e1002352

2017

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Advances in Blood Pressure Genomics

Circulation research, 2013-05, Vol.112 (10), p.1365-1379

2013

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Reaching the End-Game for GWAS: Machine Learning Approaches for the Prioritization of Complex Disease Loci

Frontiers in genetics, 2020-04, Vol.11, p.350-350

2020

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Characterizing Nature and Participant Experience in Studies of Nature Exposure for Positive Mental Health: An Integrative Review

Frontiers in psychology, 2019-01, Vol.9, p.2617

2019

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Enhanced NF-κB signaling in type-2 dendritic cells at baseline predicts non-response to adalimumab in psoriasis

Nature communications, 2021-08, Vol.12 (1), p.4741-4741, Article 4741

2021

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Genome-Wide Pharmacogenetics of Antidepressant Response in the GENDEP Project

The American journal of psychiatry, 2010-05, Vol.167 (5), p.555-564

2010

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Gene Ranking of RNA-Seq Data via Discriminant Non-Negative Matrix Factorization

PloS one, 2015-09, Vol.10 (9), p.e0137782-e0137782

2015

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Transcription and pathway analysis of the superior temporal cortex and anterior prefrontal cortex in schizophrenia

Journal of neuroscience research, 2011-08, Vol.89 (8), p.1218-1227

2011

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Genome-Wide Association Study of Major Recurrent Depression in the U.K. Population

The American journal of psychiatry, 2010-08, Vol.167 (8), p.949-957

2010

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A Bayesian method to incorporate hundreds of functional characteristics with association evidence to improve variant prioritization

PloS one, 2014-05, Vol.9 (5), p.e98122-e98122

2014

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Clinical applications of machine learning algorithms: beyond the black box

BMJ (Online), 2019-03, Vol.364, p.l886

2019

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Author Correction: Enhanced NF-κB signaling in type-2 dendritic cells at baseline predicts non-response to adalimumab in psoriasis

Nature communications, 2021-12, Vol.12 (1), p.7358-7358, Article 7358

2021

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AI approaches for the discovery and validation of drug targets

Cambridge Prisms: Precision Medicine, 2024-01, Vol.2, p.e7, Article e7

2024

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The successes and challenges of harmonising juvenile idiopathic arthritis (JIA) datasets to create a large-scale JIA data resource

Pediatric rheumatology online journal, 2023-07, Vol.21 (1), p.70-70, Article 70

2023

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shinyExprPortal: a configurable ‘shiny’ portal for sharing analysis of molecular expression data

Bioinformatics (Oxford, England), 2024-03, Vol.40 (4)

2024

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Use of genome-wide association studies for drug repositioning

Nature biotechnology, 2012-04, Vol.30 (4), p.317-320

2012

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Prediction of treatment response in rheumatoid arthritis patients using genome‐wide SNP data

Genetic epidemiology, 2018-12, Vol.42 (8), p.754-771

2018

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“Nothing Beats Nature”: Park Visitor Preferences for Natural Turfgrass and Artificial Turf: A Case Study

HortScience, 2023-04, Vol.58 (4), p.453-458

2023

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Using functional annotation for the empirical determination of Bayes Factors for genome-wide association study analysis

PloS one, 2011-04, Vol.6 (4), p.e14808-e14808

2011

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Correction: Signatures of inflammation and impending multiple organ dysfunction in the hyperacute phase of trauma: A prospective cohort study

PLoS medicine, 2018-10, Vol.15 (10), p.e1002694-e1002694

2018

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Whole exome sequencing identifies deleterious rare variants in CCDC141 in familial self-limited delayed puberty

Npj genomic medicine, 2021-12, Vol.6 (1), p.107-107, Article 107

2021

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Synovial cellular and molecular signatures stratify clinical response to csDMARD therapy and predict radiographic progression in early rheumatoid arthritis patients

Annals of the rheumatic diseases, 2019-06, Vol.78 (6), p.761-772

2019

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The benefits and pitfalls of machine learning for biomarker discovery

Ethnic differences in early onset multimorbidity and associations with health service use, long-term prescribing, years of life lost, and mortality: A cross-sectional study using clustering in the UK Clinical Practice Research Datalink

Spectrum: fast density-aware spectral clustering for single and multi-omic data

Signatures of inflammation and impending multiple organ dysfunction in the hyperacute phase of trauma: A prospective cohort study

Advances in Blood Pressure Genomics

Reaching the End-Game for GWAS: Machine Learning Approaches for the Prioritization of Complex Disease Loci

Characterizing Nature and Participant Experience in Studies of Nature Exposure for Positive Mental Health: An Integrative Review

Enhanced NF-κB signaling in type-2 dendritic cells at baseline predicts non-response to adalimumab in psoriasis

Genome-Wide Pharmacogenetics of Antidepressant Response in the GENDEP Project

Gene Ranking of RNA-Seq Data via Discriminant Non-Negative Matrix Factorization

Transcription and pathway analysis of the superior temporal cortex and anterior prefrontal cortex in schizophrenia

Genome-Wide Association Study of Major Recurrent Depression in the U.K. Population

A Bayesian method to incorporate hundreds of functional characteristics with association evidence to improve variant prioritization

Clinical applications of machine learning algorithms: beyond the black box

Author Correction: Enhanced NF-κB signaling in type-2 dendritic cells at baseline predicts non-response to adalimumab in psoriasis

AI approaches for the discovery and validation of drug targets

The successes and challenges of harmonising juvenile idiopathic arthritis (JIA) datasets to create a large-scale JIA data resource

shinyExprPortal: a configurable ‘shiny’ portal for sharing analysis of molecular expression data

Use of genome-wide association studies for drug repositioning

Prediction of treatment response in rheumatoid arthritis patients using genome‐wide SNP data

“Nothing Beats Nature”: Park Visitor Preferences for Natural Turfgrass and Artificial Turf: A Case Study

Using functional annotation for the empirical determination of Bayes Factors for genome-wide association study analysis

Correction: Signatures of inflammation and impending multiple organ dysfunction in the hyperacute phase of trauma: A prospective cohort study

Whole exome sequencing identifies deleterious rare variants in CCDC141 in familial self-limited delayed puberty

Synovial cellular and molecular signatures stratify clinical response to csDMARD therapy and predict radiographic progression in early rheumatoid arthritis patients

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