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Phenylalanine-508 mediates a cytoplasmic-membrane domain contact in the CFTR 3D structure crucial to assembly and channel function

Proceedings of the National Academy of Sciences - PNAS, 2008-03, Vol.105 (9), p.3256-3261

2008

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Positively selected sites in cetacean myoglobins contribute to protein stability

PLoS computational biology, 2013-03, Vol.9 (3), p.e1002929-e1002929

2013

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Protein Homeostasis Imposes a Barrier on Functional Integration of Horizontally Transferred Genes in Bacteria

PLoS genetics, 2015-10, Vol.11 (10), p.e1005612-e1005612

2015

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Non-consecutive enzyme interactions within TCA cycle supramolecular assembly regulate carbon-nitrogen metabolism

Nature communications, 2024-06, Vol.15 (1), p.5285-15, Article 5285

2024

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Bridging the physical scales in evolutionary biology: from protein sequence space to fitness of organisms and populations

Current opinion in structural biology, 2017-02, Vol.42, p.31-40

2017

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Multiple Membrane-Cytoplasmic Domain Contacts in the Cystic Fibrosis Transmembrane Conductance Regulator (CFTR) Mediate Regulation of Channel Gating

The Journal of biological chemistry, 2008-09, Vol.283 (39), p.26383-26390

2008

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Influenza A H1N1 pandemic strain evolution--divergence and the potential for antigenic drift variants

PloS one, 2014-04, Vol.9 (4), p.e93632-e93632

2014

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Isolation and Analysis of Rare Norovirus Recombinants from Coinfected Mice Using Drop-Based Microfluidics

Journal of virology, 2015-08, Vol.89 (15), p.7722-7734

2015

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Merging molecular mechanism and evolution: theory and computation at the interface of biophysics and evolutionary population genetics

Current opinion in structural biology, 2014-06, Vol.26, p.84-91

2014

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The Streptomyces-Produced Antibiotic Fosfomycin Is a Promiscuous Substrate for Archaeal Isopentenyl Phosphate Kinase

Biochemistry (Easton), 2012-01, Vol.51 (4), p.917-925

2012

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Contribution of selection for protein folding stability in shaping the patterns of polymorphisms in coding regions

Molecular biology and evolution, 2014-01, Vol.31 (1), p.165-176

2014

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Identification and rational redesign of peptide ligands to CRIP1, a novel biomarker for cancers

PLoS computational biology, 2008-08, Vol.4 (8), p.e1000138-e1000138

2008

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A structural model of the pore-forming region of the skeletal muscle ryanodine receptor (RyR1)

PLoS computational biology, 2009-04, Vol.5 (4), p.e1000367-e1000367

2009

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Highly Abundant Proteins Favor More Stable 3D Structures in Yeast

Biophysical journal, 2013-02, Vol.104 (3), p.L1-L3

2013

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The Combination of IFN β and TNF Induces an Antiviral and Immunoregulatory Program via Non-Canonical Pathways Involving STAT2 and IRF9

Cells (Basel, Switzerland), 2019-08, Vol.8 (8), p.919

2019

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Protein Quality Control Acts on Folding Intermediates to Shape the Effects of Mutations on Organismal Fitness

Molecular cell, 2013-01, Vol.49 (1), p.133-144

2013

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The Fitness Effects of Codon Composition of the Horizontally Transferred Antibiotic Resistance Genes Intensify at Sub-lethal Antibiotic Levels

Molecular biology and evolution, 2023-06, Vol.40 (6)

2023

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Evolutionary dynamics of viral escape under antibodies stress: A biophysical model

Protein science, 2016-07, Vol.25 (7), p.1332-1340

2016

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Minimalistic Predictor of Protein Binding Energy: Contribution of Solvation Factor to Protein Binding

Biophysical journal, 2015-02, Vol.108 (4), p.795-798

2015

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A Structural Model Reveals Energy Transduction in Dynein

Proceedings of the National Academy of Sciences - PNAS, 2006-12, Vol.103 (49), p.18540-18545

2006

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Kinetic models for the coordinated stepping of cytoplasmic dynein

The Journal of chemical physics, 2009-01, Vol.130 (2), p.025101-025101-13

2009

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Estimating the contribution of folding stability to nonspecific epistasis in protein evolution

Proteins, structure, function, and bioinformatics, 2018-12, Vol.86 (12), p.1242-1250

2018

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Structural Basis for μ-Opioid Receptor Binding and Activation

Structure (London), 2011-11, Vol.19 (11), p.1683-1690

2011

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Avoidance of protein unfolding constrains protein stability in long-term evolution

Biophysical journal, 2021-06, Vol.120 (12), p.2413-2424

2021

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SodaPop: a forward simulation suite for the evolutionary dynamics of asexual populations on protein fitness landscapes

Bioinformatics, 2019-10, Vol.35 (20), p.4053-4062

2019

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Phenylalanine-508 mediates a cytoplasmic-membrane domain contact in the CFTR 3D structure crucial to assembly and channel function

Positively selected sites in cetacean myoglobins contribute to protein stability

Protein Homeostasis Imposes a Barrier on Functional Integration of Horizontally Transferred Genes in Bacteria

Non-consecutive enzyme interactions within TCA cycle supramolecular assembly regulate carbon-nitrogen metabolism

Bridging the physical scales in evolutionary biology: from protein sequence space to fitness of organisms and populations

Multiple Membrane-Cytoplasmic Domain Contacts in the Cystic Fibrosis Transmembrane Conductance Regulator (CFTR) Mediate Regulation of Channel Gating

Influenza A H1N1 pandemic strain evolution--divergence and the potential for antigenic drift variants

Isolation and Analysis of Rare Norovirus Recombinants from Coinfected Mice Using Drop-Based Microfluidics

Merging molecular mechanism and evolution: theory and computation at the interface of biophysics and evolutionary population genetics

The Streptomyces-Produced Antibiotic Fosfomycin Is a Promiscuous Substrate for Archaeal Isopentenyl Phosphate Kinase

Contribution of selection for protein folding stability in shaping the patterns of polymorphisms in coding regions

Identification and rational redesign of peptide ligands to CRIP1, a novel biomarker for cancers

A structural model of the pore-forming region of the skeletal muscle ryanodine receptor (RyR1)

Highly Abundant Proteins Favor More Stable 3D Structures in Yeast

The Combination of IFN β and TNF Induces an Antiviral and Immunoregulatory Program via Non-Canonical Pathways Involving STAT2 and IRF9

Protein Quality Control Acts on Folding Intermediates to Shape the Effects of Mutations on Organismal Fitness

The Fitness Effects of Codon Composition of the Horizontally Transferred Antibiotic Resistance Genes Intensify at Sub-lethal Antibiotic Levels

Evolutionary dynamics of viral escape under antibodies stress: A biophysical model

Minimalistic Predictor of Protein Binding Energy: Contribution of Solvation Factor to Protein Binding

A Structural Model Reveals Energy Transduction in Dynein

Kinetic models for the coordinated stepping of cytoplasmic dynein

Estimating the contribution of folding stability to nonspecific epistasis in protein evolution

Structural Basis for μ-Opioid Receptor Binding and Activation

Avoidance of protein unfolding constrains protein stability in long-term evolution

SodaPop: a forward simulation suite for the evolutionary dynamics of asexual populations on protein fitness landscapes

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