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Gigascience, 2019-05, Vol.8 (5)
2019
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Nature methods, 2014-11, Vol.11 (11), p.1144
2014
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Genome Biology, 2019-01, Vol.20 (1), p.8-19, Article 8
2019
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Nature protocols, 2017-06, Vol.12 (6), p.1261-1276
- Quick, Joshua
- Grubaugh, Nathan D
- Pullan, Steven T
- Claro, Ingra M
- Smith, Andrew D
- Gangavarapu, Karthik
- Oliveira, Glenn
- Robles-Sikisaka, Refugio
- Rogers, Thomas F
- Beutler, Nathan A
- Burton, Dennis R
- Lewis-Ximenez, Lia Laura
- de Jesus, Jaqueline Goes
- Giovanetti, Marta
- Hill, Sarah C
- Black, Allison
- Bedford, Trevor
- Carroll, Miles W
- Nunes, Marcio
- Alcantara, Jr, Luiz Carlos
- Sabino, Ester C
- Baylis, Sally A
- Faria, Nuno R
- Loose, Matthew
- Simpson, Jared T
- Pybus, Oliver G
- Andersen, Kristian G
- Loman, Nicholas J
2017
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Cell, 2020-05, Vol.181 (5), p.990-996.e5
- Fauver, Joseph R.
- Petrone, Mary E.
- Hodcroft, Emma B.
- Shioda, Kayoko
- Ehrlich, Hanna Y.
- Watts, Alexander G.
- Vogels, Chantal B.F.
- Brito, Anderson F.
- Alpert, Tara
- Muyombwe, Anthony
- Razeq, Jafar
- Downing, Randy
- Cheemarla, Nagarjuna R.
- Wyllie, Anne L.
- Kalinich, Chaney C.
- Ott, Isabel M.
- Quick, Joshua
- Loman, Nicholas J.
- Neugebauer, Karla M.
- Greninger, Alexander L.
- Jerome, Keith R.
- Roychoudhury, Pavitra
- Xie, Hong
- Shrestha, Lasata
- Huang, Meei-Li
- Pitzer, Virginia E.
- Iwasaki, Akiko
- Omer, Saad B.
- Khan, Kamran
- Bogoch, Isaac I.
- Martinello, Richard A.
- Foxman, Ellen F.
- Landry, Marie L.
- Neher, Richard A.
- Ko, Albert I.
- Grubaugh, Nathan D.
2020
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Nature (London), 2021-09, Vol.597 (7877), p.539-543
- Keita, Alpha Kabinet
- Koundouno, Fara R
- Faye, Martin
- Düx, Ariane
- Hinzmann, Julia
- Diallo, Haby
- Ayouba, Ahidjo
- Le Marcis, Frederic
- Soropogui, Barré
- Ifono, Kékoura
- Diagne, Moussa M
- Sow, Mamadou S
- Bore, Joseph A
- Calvignac-Spencer, Sebastien
- Vidal, Nicole
- Camara, Jacob
- Keita, Mamadou B
- Renevey, Annick
- Diallo, Amadou
- Soumah, Abdoul K
- Millimono, Saa L
- Mari-Saez, Almudena
- Diop, Mamadou
- Doré, Ahmadou
- Soumah, Fodé Y
- Kourouma, Kaka
- Vielle, Nathalie J
- Loucoubar, Cheikh
- Camara, Ibrahima
- Kourouma, Karifa
- Annibaldis, Giuditta
- Bah, Assaïtou
- Thielebein, Anke
- Pahlmann, Meike
- Pullan, Steven T
- Carroll, Miles W
- Quick, Joshua
- Formenty, Pierre
- Legand, Anais
- Pietro, Karla
- Wiley, Michael R
- Tordo, Noel
- Peyrefitte, Christophe
- McCrone, John T
- Rambaut, Andrew
- Sidibé, Youssouf
- Barry, Mamadou D
- Kourouma, Madeleine
- Saouromou, Cé D
- Condé, Mamadou
- Baldé, Moussa
- Povogui, Moriba
- Keita, Sakoba
- Diakite, Mandiou
- Bah, Mamadou S
- Sidibe, Amadou
- Diakite, Dembo
- Sako, Fodé B
- Traore, Fodé A
- Ki-Zerbo, Georges A
- Lemey, Philippe
- Günther, Stephan
- Kafetzopoulou, Liana E
- Sall, Amadou A
- Delaporte, Eric
- Duraffour, Sophie
- Faye, Ousmane
- Leendertz, Fabian H
- Peeters, Martine
- Toure, Abdoulaye
- Magassouba, N' Faly
2021
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Genome Biology, 2015-05, Vol.16 (1), p.114-114, Article 114
2015
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IEEE transactions on learning technologies, 2021-04, Vol.14 (2), p.189-200
2021
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Revista do Instituto de Medicina Tropical de São Paulo, 2020-01, Vol.62, p.e30-e30
- Jesus, Jaqueline Goes de
- Sacchi, Claudio
- Candido, Darlan da Silva
- Claro, Ingra Morales
- Sales, Flávia Cristina Silva
- Manuli, Erika Regina
- Silva, Daniela Bernardes Borges da
- Paiva, Terezinha Maria de
- Pinho, Margarete Aparecida Benega
- Santos, Katia Correa de Oliveira
- Hill, Sarah Catherine
- Aguiar, Renato Santana
- Romero, Filipe
- Santos, Fabiana Cristina Pereira Dos
- Gonçalves, Claudia Regina
- Timenetsky, Maria do Carmo
- Quick, Joshua
- Croda, Julio Henrique Rosa
- Oliveira, Wanderson de
- Rambaut, Andrew
- Pybus, Oliver G.
- Loman, Nicholas J.
- Sabino, Ester Cerdeira
- Faria, Nuno Rodrigues
2020
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PLoS pathogens, 2020-08, Vol.16 (8), p.e1008699-e1008699
- Hill, Sarah C
- de Souza, Renato
- Thézé, Julien
- Claro, Ingra
- Aguiar, Renato S
- Abade, Leandro
- Santos, Fabiana C P
- Cunha, Mariana S
- Nogueira, Juliana S
- Salles, Flavia C S
- Rocco, Iray M
- Maeda, Adriana Y
- Vasami, Fernanda G S
- du Plessis, Louis
- Silveira, Paola P
- de Jesus, Jaqueline G
- Quick, Joshua
- Fernandes, Natália C C A
- Guerra, Juliana M
- Réssio, Rodrigo A
- Giovanetti, Marta
- Alcantara, Luiz C J
- Cirqueira, Cinthya S
- Díaz-Delgado, Josué
- Macedo, Fernando L L
- Timenetsky, Maria do Carmo S T
- de Paula, Regiane
- Spinola, Roberta
- Telles de Deus, Juliana
- Mucci, Luís F
- Tubaki, Rosa Maria
- de Menezes, Regiane M T
- Ramos, Patrícia L
- de Abreu, Andre L
- Cruz, Laura N
- Loman, Nick
- Dellicour, Simon
- Pybus, Oliver G
- Sabino, Ester C
- Faria, Nuno R
- Lauring, Adam S.
2020
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Cell reports (Cambridge), 2020-02, Vol.30 (7), p.2275-2283.e7
- Giovanetti, Marta
- Faria, Nuno Rodrigues
- Lourenço, José
- Goes de Jesus, Jaqueline
- Xavier, Joilson
- Claro, Ingra Morales
- Kraemer, Moritz U.G.
- Fonseca, Vagner
- Dellicour, Simon
- Thézé, Julien
- da Silva Salles, Flavia
- Gräf, Tiago
- Silveira, Paola Paz
- do Nascimento, Valdinete Alves
- Costa de Souza, Victor
- de Melo Iani, Felipe Campos
- Castilho-Martins, Emerson Augusto
- Cruz, Laura Nogueira
- Wallau, Gabriel
- Fabri, Allison
- Levy, Flávia
- Quick, Joshua
- de Azevedo, Vasco
- Aguiar, Renato Santana
- de Oliveira, Tulio
- Bôtto de Menezes, Camila
- da Costa Castilho, Marcia
- Terra, Tirza Matos
- Souza da Silva, Marineide
- Bispo de Filippis, Ana Maria
- Luiz de Abreu, André
- Oliveira, Wanderson Kleber
- Croda, Julio
- Campelo de Albuquerque, Carlos F.
- Nunes, Marcio R.T.
- Sabino, Ester Cerdeira
- Loman, Nicholas
- Naveca, Felipe Gomes
- Pybus, Oliver G.
- Alcantara, Luiz Carlos
2020
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Emerging infectious diseases, 2016-12, Vol.22 (12), p.2149-2152
2016
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Information (Basel), 2021-01, Vol.12 (1), p.13
2021
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International journal of infectious diseases, 2021-10, Vol.110, p.S69-S76
- Subissi, Lorenzo
- Sousa, Andreza
- Ba, Ibrahima
- Perrocheau, Anne
- Quick, Joshua
- Meredith, Luke
- Augustinho, Edmilson
- Sousa, Beni Carvalho
- Lima, Vania
- Luiz, Jose
- Diallo, Amadou Bailo
- Djingarey, Mamoudou Harouna
- Da Cruz, Claudina Augusto
- Pontes, Feliciana Sousa
- Tomé Palmer, Maria
- Conceição, Marisa
- Santana Gil, Vilfrido
- Fall, Ibrahima Socé
2021
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Journal of cardiothoracic and vascular anesthesia, 2017-04, Vol.31 (2), p.497-504
2017
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Nature methods, 2015-08, Vol.12 (8), p.733
2015
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Wellcome open research, 2021-01, Vol.6, p.241-241
- Claro, Ingra M.
- Ramundo, Mariana S.
- Coletti, Thais M.
- da Silva, Camila A. M.
- Valenca, Ian N.
- Candido, Darlan S.
- Sales, Flavia C. S.
- Manuli, Erika R.
- de Jesus, Jaqueline G.
- de Paula, Anderson
- Felix, Alvina Clara
- Andrade, Pamela dos Santos
- Pinho, Mariana C.
- Souza, William M.
- Amorim, Mariene R.
- Proenca-Modena, José Luiz
- Kallas, Esper G.
- Levi, José Eduardo
- Faria, Nuno Rodrigues
- Sabino, Ester C.
- Loman, Nicholas J.
- Quick, Joshua
2021
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Nature methods, 2019-12, Vol.16 (12), p.1297
- Workman, Rachael E
- Tang, Alison D
- Tang, Paul S
- Jain, Miten
- Tyson, John R
- Razaghi, Roham
- Zuzarte, Philip C
- Gilpatrick, Timothy
- Payne, Alexander
- Quick, Joshua
- Sadowski, Norah
- Holmes, Nadine
- de Jesus, Jaqueline Goes
- Jones, Karen L
- Soulette, Cameron M
- Snutch, Terrance P
- Loman, Nicholas
- Paten, Benedict
- Loose, Matthew
- Simpson, Jared T
- Olsen, Hugh E
- Brooks, Angela N
- Akeson, Mark
- Timp, Winston
2019
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Gigascience, 2014-10, Vol.3 (1), p.22-22, Article 22
2014
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Microbiology resource announcements, 2023-04, Vol.12 (4), p.e0009023-e0009023
2023
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Nature (London), 2016-02, Vol.530 (7589), p.228-232
- Quick, Joshua
- Loman, Nicholas J
- Duraffour, Sophie
- Simpson, Jared T
- Severi, Ettore
- Cowley, Lauren
- Bore, Joseph Akoi
- Koundouno, Raymond
- Dudas, Gytis
- Mikhail, Amy
- Ouédraogo, Nobila
- Afrough, Babak
- Bah, Amadou
- Baum, Jonathan Hj
- Becker-Ziaja, Beate
- Boettcher, Jan-Peter
- Cabeza-Cabrerizo, Mar
- Camino-Sanchez, Alvaro
- Carter, Lisa L
- Doerrbecker, Juiliane
- Enkirch, Theresa
- Dorival, Isabel Graciela García
- Hetzelt, Nicole
- Hinzmann, Julia
- Holm, Tobias
- Kafetzopoulou, Liana Eleni
- Koropogui, Michel
- Kosgey, Abigail
- Kuisma, Eeva
- Logue, Christopher H
- Mazzarelli, Antonio
- Meisel, Sarah
- Mertens, Marc
- Michel, Janine
- Ngabo, Didier
- Nitzsche, Katja
- Pallash, Elisa
- Patrono, Livia Victoria
- Portmann, Jasmine
- Repits, Johanna Gabriella
- Rickett, Natasha Yasmin
- Sachse, Andrea
- Singethan, Katrin
- Vitoriano, Inês
- Yemanaberhan, Rahel L
- Zekeng, Elsa G
- Trina, Racine
- Bello, Alexander
- Sall, Amadou Alpha
- Faye, Ousmane
- Faye, Oumar
- Magassouba, N'Faly
- Williams, Cecelia V
- Amburgey, Victoria
- Winona, Linda
- Davis, Emily
- Gerlach, Jon
- Washington, Franck
- Monteil, Vanessa
- Jourdain, Marine
- Bererd, Marion
- Camara, Alimou
- Somlare, Hermann
- Camara, Abdoulaye
- Gerard, Marianne
- Baillet, Bernard
- Delaune, Déborah
- Nebie, Koumpingnin Yacouba
- Diarra, Abdoulaye
- Savane, Yacouba
- Pallawo, Raymond Bernard
- Milhano, Natacha
- Roger, Isabelle
- Williams, Christopher J
- Yattara, Facinet
- Lewandowski, Kuiama
- Taylor, Jamie
- Rachwal, Philip
- Turner, Daniel
- Pollakis, Georgios
- Hiscox, Julian A
- Matthews, David A
- O'Shea, Matthew K
- Johnston, Andrew McD
- Wilson, Duncan
- Hutley, Emma
- Smit, Erasmus
- Di Caro, Antonino
- Woelfel, Roman
- Stoecker, Kilian
- Fleischmann, Erna
- Gabriel, Martin
- Weller, Simon A
- Koivogui, Lamine
- Diallo, Boubacar
- Keita, Sakoba
- Rambaut, Andrew
- Formenty, Pierre
- Gunther, Stephan
- Carroll, Miles W
2016
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The American journal of gastroenterology, 2015-12, Vol.110 (12), p.1718-1729
2015
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PLoS biology, 2021-05, Vol.19 (5), p.e3001236-e3001236
- Vogels, Chantal B F
- Breban, Mallery I
- Ott, Isabel M
- Alpert, Tara
- Petrone, Mary E
- Watkins, Anne E
- Kalinich, Chaney C
- Earnest, Rebecca
- Rothman, Jessica E
- Goes de Jesus, Jaqueline
- Morales Claro, Ingra
- Magalhães Ferreira, Giulia
- Crispim, Myuki A E
- Singh, Lavanya
- Tegally, Houriiyah
- Anyaneji, Ugochukwu J
- Hodcroft, Emma B
- Mason, Christopher E
- Khullar, Gaurav
- Metti, Jessica
- Dudley, Joel T
- MacKay, Matthew J
- Nash, Megan
- Wang, Jianhui
- Liu, Chen
- Hui, Pei
- Murphy, Steven
- Neal, Caleb
- Laszlo, Eva
- Landry, Marie L
- Muyombwe, Anthony
- Downing, Randy
- Razeq, Jafar
- de Oliveira, Tulio
- Faria, Nuno R
- Sabino, Ester C
- Neher, Richard A
- Fauver, Joseph R
- Grubaugh, Nathan D
- Sugden, Bill
2021
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International journal of human-computer studies, 2022-12, Vol.168, p.102923, Article 102923
2022
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JAMA : the journal of the American Medical Association, 2013-04, Vol.309 (14), p.1502
2013
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