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Calcium modeling of spine apparatus-containing human dendritic spines demonstrates an "all-or-nothing" communication switch between the spine head and dendrite

PLoS computational biology, 2022-04, Vol.18 (4), p.e1010069-e1010069

2022

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Multi-scale modeling toolbox for single neuron and subcellular activity under Transcranial Magnetic Stimulation

Brain stimulation, 2021-11, Vol.14 (6), p.1470-1482

2021

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Nitrate Is an Environmental Cue in the Gut for Salmonella enterica Serovar Typhimurium Biofilm Dispersal through Curli Repression and Flagellum Activation via Cyclic-di-GMP Signaling

mBio, 2022-02, Vol.13 (1), p.e0288621-e0288621

2022

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Density Visualization Pipeline: A Tool for Cellular and Network Density Visualization and Analysis

Frontiers in computational neuroscience, 2020-06, Vol.14, p.42-42

2020

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Synaptic Activity Induces Dramatic Changes in the Geometry of the Cell Nucleus: Interplay between Nuclear Structure, Histone H3 Phosphorylation, and Nuclear Calcium Signaling

The Journal of neuroscience, 2009-11, Vol.29 (47), p.14687-14700

2009

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Open-source toolbox for multi-scale modeling of single neurons under transcranial magnetic stimulation

Brain stimulation, 2021-11, Vol.14 (6), p.1697-1697

2021

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Modeling calcium dynamics in neurons with endoplasmic reticulum: Existence, uniqueness and an implicit–explicit finite element scheme

Communications in nonlinear science & numerical simulation, 2022-06, Vol.109, p.106354, Article 106354

2022

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The Necessary Modeling Detail for Neuronal Signaling: Poisson--Nernst--Planck and Cable Equation Models in One and Three Dimensions

SIAM journal on applied mathematics, 2021-01, Vol.81 (2), p.530-550

2021

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A Bead Movement Based Computational Framework for 3-Dimensional Analysis of Biofilm Material Heterogeneity

Journal of visualized experiments, 2021-06 (172)

2021

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Weak Galerkin finite element method for second order problems on curvilinear polytopal meshes with Lipschitz continuous edges or faces

Computers & mathematics with applications (1987), 2023-10, Vol.148, p.282-292

2023

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Structural dynamics of the cell nucleus: Basis for morphology modulation of nuclear calcium signaling and gene transcription

Nucleus (Austin, Tex.), 2011-03, Vol.2 (2), p.98-104

2011

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Cellular and nuclear morphology…and calcium signaling: revealing the interplay between structure and function

BMC neuroscience, 2012-07, Vol.13 (S1), p.P65-P65, Article P65

2012

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Neuronal Resilience and Calcium Signaling Pathways in the Context of Synapse Loss and Calcium Leaks: A Computational Modeling Study and Implications for Alzheimer’s Disease

SIAM journal on applied mathematics, 2023-01, Vol.83 (6), p.2418-2442

2023

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Modeling Drug Absorption from the Dermis after an Injection

Journal of pharmaceutical sciences, 2021-03, Vol.110 (3), p.1279-1291.e1

2021

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Synaptic bouton sizes are tuned to best fit their physiological performances

BMC neuroscience, 2011-07, Vol.12 (S1), p.P371-P371, Article P371

2011

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Spine-to-Dendrite Calcium Modeling Discloses Relevance for Precise Positioning of Ryanodine Receptor-Containing Spine Endoplasmic Reticulum

Scientific reports, 2018-10, Vol.8 (1), p.15624-17, Article 15624

2018

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Generating Neuron Geometries for Detailed Three-Dimensional Simulations Using AnaMorph

Neuroinformatics (Totowa, N.J.), 2017-07, Vol.15 (3), p.247-269

2017

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Cellular and Nuclear Morphology…and Calcium Signaling: Revealing the Interplay between Structure and Function

Frontiers in computational neuroscience, 2012, Vol.6

Gillian, Queisser

2012

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Editorial

Computing and visualization in science, 2019-09, Vol.20 (3-6), p.47-47

2019

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Structural dynamics of the nucleus: Basis for Morphology Modulation of Nuclear Calcium Signaling and Gene Transcription

Frontiers in computational neuroscience, 2011, Vol.5

Gillian, Queisser

2011

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A method to investigate the diffusion properties of nuclear calcium

Biological cybernetics, 2011-10, Vol.105 (3-4), p.211-216

2011

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Editorial

Computing and visualization in science, 2019-01, Vol.20 (3), p.47-47

2019

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Editorial

Computing and visualization in science, 2019, Vol.20 (3-6), p.47-47

2019

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Correction to: Editorial

Computing and visualization in science, 2019, Vol.20 (3-6), p.49-49

2019

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Three-dimensional Computational Modeling of Cellular Calcium Dynamics in Healthy and Pathological Neurons

Frontiers in computational neuroscience, 2010, Vol.4

Gillian, Queisser

2010

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Calcium modeling of spine apparatus-containing human dendritic spines demonstrates an "all-or-nothing" communication switch between the spine head and dendrite

Multi-scale modeling toolbox for single neuron and subcellular activity under Transcranial Magnetic Stimulation

Nitrate Is an Environmental Cue in the Gut for Salmonella enterica Serovar Typhimurium Biofilm Dispersal through Curli Repression and Flagellum Activation via Cyclic-di-GMP Signaling

Density Visualization Pipeline: A Tool for Cellular and Network Density Visualization and Analysis

Synaptic Activity Induces Dramatic Changes in the Geometry of the Cell Nucleus: Interplay between Nuclear Structure, Histone H3 Phosphorylation, and Nuclear Calcium Signaling

Open-source toolbox for multi-scale modeling of single neurons under transcranial magnetic stimulation

Modeling calcium dynamics in neurons with endoplasmic reticulum: Existence, uniqueness and an implicit–explicit finite element scheme

The Necessary Modeling Detail for Neuronal Signaling: Poisson--Nernst--Planck and Cable Equation Models in One and Three Dimensions

A Bead Movement Based Computational Framework for 3-Dimensional Analysis of Biofilm Material Heterogeneity

Weak Galerkin finite element method for second order problems on curvilinear polytopal meshes with Lipschitz continuous edges or faces

Structural dynamics of the cell nucleus: Basis for morphology modulation of nuclear calcium signaling and gene transcription

Cellular and nuclear morphology…and calcium signaling: revealing the interplay between structure and function

Neuronal Resilience and Calcium Signaling Pathways in the Context of Synapse Loss and Calcium Leaks: A Computational Modeling Study and Implications for Alzheimer’s Disease

Modeling Drug Absorption from the Dermis after an Injection

Synaptic bouton sizes are tuned to best fit their physiological performances

Spine-to-Dendrite Calcium Modeling Discloses Relevance for Precise Positioning of Ryanodine Receptor-Containing Spine Endoplasmic Reticulum

Generating Neuron Geometries for Detailed Three-Dimensional Simulations Using AnaMorph

Cellular and Nuclear Morphology…and Calcium Signaling: Revealing the Interplay between Structure and Function

Editorial

Structural dynamics of the nucleus: Basis for Morphology Modulation of Nuclear Calcium Signaling and Gene Transcription

A method to investigate the diffusion properties of nuclear calcium

Editorial

Editorial

Correction to: Editorial

Three-dimensional Computational Modeling of Cellular Calcium Dynamics in Healthy and Pathological Neurons

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