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Dynamic reorganization of the genome shapes the recombination landscape in meiotic prophase

Nature structural & molecular biology, 2019-03, Vol.26 (3), p.164

2019

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A single-cell atlas of chromatin accessibility in the human genome

Cell, 2021-11, Vol.184 (24), p.5985-6001.e19

2021

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The Hippo pathway effector proteins YAP and TAZ have both distinct and overlapping functions in the cell

The Journal of biological chemistry, 2018-07, Vol.293 (28), p.11230-11240

2018

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A Compendium of Chromatin Contact Maps Reveals Spatially Active Regions in the Human Genome

Cell reports (Cambridge), 2016-11, Vol.17 (8), p.2042-2059

2016

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Multi-platform discovery of haplotype-resolved structural variation in human genomes

Nature communications, 2019-04, Vol.10 (1), p.1784-16, Article 1784

2019

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Sequence logic at enhancers governs a dual mechanism of endodermal organ fate induction by FOXA pioneer factors

Nature communications, 2021-11, Vol.12 (1), p.6636-6636, Article 6636

2021

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Transcriptionally active HERV-H retrotransposons demarcate topologically associating domains in human pluripotent stem cells

Nature genetics, 2019-09, Vol.51 (9), p.1380-1388

2019

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Pancreatic islet chromatin accessibility and conformation reveals distal enhancer networks of type 2 diabetes risk

Nature communications, 2019-05, Vol.10 (1), p.2078-2078, Article 2078

2019

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Single-cell chromatin accessibility identifies pancreatic islet cell type- and state-specific regulatory programs of diabetes risk

Nature genetics, 2021-04, Vol.53 (4), p.455-466

2021

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MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments

PLoS computational biology, 2019-04, Vol.15 (4), p.e1006982-e1006982

2019

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Epigenetic Priming of Enhancers Predicts Developmental Competence of hESC-Derived Endodermal Lineage Intermediates

Cell stem cell, 2015-04, Vol.16 (4), p.386-399

2015

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Integrative analysis of haplotype-resolved epigenomes across human tissues

Nature (London), 2015-02, Vol.518 (7539), p.350-354

2015

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Inferring time series chromatin states for promoter-enhancer pairs based on Hi-C data

BMC genomics, 2021-01, Vol.22 (1), p.84-84, Article 84

2021

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Histone H3 lysine 4 monomethylation modulates long- range chromatin interactions at enhancers

Cell research, 2018-02, Vol.28 (2), p.204-220

2018

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Common DNA sequence variation influences 3-dimensional conformation of the human genome

Genome Biology, 2019-11, Vol.20 (1), p.255-25, Article 255

2019

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Pancreatic progenitor epigenome maps prioritize type 2 diabetes risk genes with roles in development

eLife, 2021-02, Vol.10

2021

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A deep population reference panel of tandem repeat variation

Nature communications, 2023-10, Vol.14 (1), p.6711-6711, Article 6711

2023

Volltextzugriff (PDF)

FIREcaller: Detecting frequently interacting regions from Hi-C data

Computational and structural biotechnology journal, 2021-01, Vol.19, p.355-362

2021

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A tiling-deletion-based genetic screen for cis-regulatory element identification in mammalian cells

Nature methods, 2017-06, Vol.14 (6), p.629

2017

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RAP2 mediates mechanoresponses of the Hippo pathway

Nature (London), 2018-08, Vol.560 (7720), p.655-660

2018

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The 4D nucleome project

Nature (London), 2017-09, Vol.549 (7671), p.219-226

2017

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An atlas of gene regulatory elements in adult mouse cerebrum

Nature (London), 2021-10, Vol.598 (7879), p.129-136

2021

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Removing unwanted variation between samples in Hi-C experiments

Briefings in bioinformatics, 2024-03, Vol.25 (3)

2024

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Systematic analysis of binding of transcription factors to noncoding variants

Nature (London), 2021-03, Vol.591 (7848), p.147-151

2021

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Dynamic reorganization of the genome shapes the recombination landscape in meiotic prophase

A single-cell atlas of chromatin accessibility in the human genome

The Hippo pathway effector proteins YAP and TAZ have both distinct and overlapping functions in the cell

A Compendium of Chromatin Contact Maps Reveals Spatially Active Regions in the Human Genome

Multi-platform discovery of haplotype-resolved structural variation in human genomes

Sequence logic at enhancers governs a dual mechanism of endodermal organ fate induction by FOXA pioneer factors

Transcriptionally active HERV-H retrotransposons demarcate topologically associating domains in human pluripotent stem cells

Pancreatic islet chromatin accessibility and conformation reveals distal enhancer networks of type 2 diabetes risk

An atlas of dynamic chromatin landscapes in mouse fetal development

Single-cell chromatin accessibility identifies pancreatic islet cell type- and state-specific regulatory programs of diabetes risk

MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments

Epigenetic Priming of Enhancers Predicts Developmental Competence of hESC-Derived Endodermal Lineage Intermediates

Integrative analysis of haplotype-resolved epigenomes across human tissues

Inferring time series chromatin states for promoter-enhancer pairs based on Hi-C data

Histone H3 lysine 4 monomethylation modulates long- range chromatin interactions at enhancers

Common DNA sequence variation influences 3-dimensional conformation of the human genome

Pancreatic progenitor epigenome maps prioritize type 2 diabetes risk genes with roles in development

A deep population reference panel of tandem repeat variation

FIREcaller: Detecting frequently interacting regions from Hi-C data

A tiling-deletion-based genetic screen for cis-regulatory element identification in mammalian cells

RAP2 mediates mechanoresponses of the Hippo pathway

The 4D nucleome project

An atlas of gene regulatory elements in adult mouse cerebrum

Removing unwanted variation between samples in Hi-C experiments

Systematic analysis of binding of transcription factors to noncoding variants

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