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Nonequilibrium Enhances Adaptation Efficiency of Stochastic Biochemical Systems

PloS one, 2016-05, Vol.11 (5), p.e0155838-e0155838

2016

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Integrating phosphorylation network with transcriptional network reveals novel functional relationships

PloS one, 2012-03, Vol.7 (3), p.e33160-e33160

2012

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A remark on copy number variation detection methods

PloS one, 2018-04, Vol.13 (4), p.e0196226

2018

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Characterizing the strand-specific distribution of non-CpG methylation in human pluripotent cells

Nucleic acids research, 2014-03, Vol.42 (5), p.3009-3016

2014

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Combinatorial regulation of transcription factors and microRNAs

BMC systems biology, 2010-11, Vol.4 (1), p.150-150, Article 150

2010

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Searching for bidirectional promoters in Arabidopsis thaliana

BMC bioinformatics, 2009-01, Vol.10 Suppl 1 (S1), p.S29-S29, Article S29

2009

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Integrative Approaches for microRNA Target Prediction: Combining Sequence Information and the Paired mRNA and miRNA Expression Profiles

Current bioinformatics, 2013-02, Vol.8 (1), p.37-45

2013

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Flexibility and symmetry of prokaryotic genome rearrangement reveal lineage-associated core-gene-defined genome organizational frameworks

mBio, 2014-11, Vol.5 (6), p.e01867-e01867

2014

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Stochastic model of yeast cell-cycle network

Physica. D, 2006-07, Vol.219 (1), p.35-39

2006

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Etiologic diagnosis of lower respiratory tract bacterial infections using sputum samples and quantitative loop-mediated isothermal amplification

PloS one, 2012-06, Vol.7 (6), p.e38743-e38743

2012

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Modular analysis of the probabilistic genetic interaction network

Bioinformatics, 2011-03, Vol.27 (6), p.853-859

2011

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Hybridization and amplification rate correction for affymetrix SNP arrays

BMC medical genomics, 2012-06, Vol.5 (1), p.24-24, Article 24

2012

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Erratum for kang et Al., flexibility and symmetry of prokaryotic genome rearrangement reveal lineage-associated core-gene-defined genome organizational frameworks

mBio, 2015-01, Vol.6 (1)

2015

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REMAS: a new regression model to identify alternative splicing events from exon array data

BMC bioinformatics, 2009-01, Vol.10 Suppl 1 (S1), p.S18-S18, Article S18

2009

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MarkovHC: Markov hierarchical clustering for the topological structure of high-dimensional single-cell omics data with transition pathway and critical point detection

Nucleic acids research, 2022-01, Vol.50 (1), p.46-56

2022

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Non-equilibrium stochastic dynamics

SCIENTIA SINICA Mathematica, 2017-12, Vol.47 (12), p.1703-1716

2017

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Networks: From Biology to Theory: From Biology to Theory

1. Aufl., 2007

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Conservation and implications of eukaryote transcriptional regulatory regions across multiple species

BMC genomics, 2008-12, Vol.9 (1), p.623-623, Article 623

2008

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Overshoot in biological systems modelled by Markov chains: a non-equilibrium dynamic phenomenon

IET systems biology, 2014-08, Vol.8 (4), p.138-145

2014

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An allosteric model of the inositol trisphosphate receptor with nonequilibrium binding

Physical biology, 2014-08, Vol.11 (5), p.056001-056001

2014

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Modeling stochastic phenotype switching and bet-hedging in bacteria: stochastic nonlinear dynamics and critical state identification

Quantitative biology, 2015-01, Vol.2 (3), p.110-125

2015

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PDEGEM: Modeling non-uniform read distribution in RNA-Seq data

BMC medical genomics, 2015-05, Vol.8 Suppl 2 (S2), p.S14-S14, Article S14

2015

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Integrative Approaches for microRNA Target Prediction: Combining Sequence Information and the Paired mRNA and miRNA Expression Profiles

Current bioinformatics, 2013-02, Vol.8 (1), p.37-45

2013

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Gene-Centric Genomewide Association Study via Entropy

Genetics (Austin), 2008-05, Vol.179 (1), p.637-650

2008

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Using graphical adaptive lasso approach to construct transcription factor and microRNA's combinatorial regulatory network in breast cancer

IET systems biology, 2014-06, Vol.8 (3), p.87-95

2014

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Nonequilibrium Enhances Adaptation Efficiency of Stochastic Biochemical Systems

Integrating phosphorylation network with transcriptional network reveals novel functional relationships

A remark on copy number variation detection methods

Characterizing the strand-specific distribution of non-CpG methylation in human pluripotent cells

Combinatorial regulation of transcription factors and microRNAs

Searching for bidirectional promoters in Arabidopsis thaliana

Integrative Approaches for microRNA Target Prediction: Combining Sequence Information and the Paired mRNA and miRNA Expression Profiles

Flexibility and symmetry of prokaryotic genome rearrangement reveal lineage-associated core-gene-defined genome organizational frameworks

Stochastic model of yeast cell-cycle network

Etiologic diagnosis of lower respiratory tract bacterial infections using sputum samples and quantitative loop-mediated isothermal amplification

Modular analysis of the probabilistic genetic interaction network

Hybridization and amplification rate correction for affymetrix SNP arrays

Erratum for kang et Al., flexibility and symmetry of prokaryotic genome rearrangement reveal lineage-associated core-gene-defined genome organizational frameworks

REMAS: a new regression model to identify alternative splicing events from exon array data

MarkovHC: Markov hierarchical clustering for the topological structure of high-dimensional single-cell omics data with transition pathway and critical point detection

Non-equilibrium stochastic dynamics

Networks: From Biology to Theory: From Biology to Theory

Conservation and implications of eukaryote transcriptional regulatory regions across multiple species

Overshoot in biological systems modelled by Markov chains: a non-equilibrium dynamic phenomenon

An allosteric model of the inositol trisphosphate receptor with nonequilibrium binding

Modeling stochastic phenotype switching and bet-hedging in bacteria: stochastic nonlinear dynamics and critical state identification

PDEGEM: Modeling non-uniform read distribution in RNA-Seq data

Integrative Approaches for microRNA Target Prediction: Combining Sequence Information and the Paired mRNA and miRNA Expression Profiles

Gene-Centric Genomewide Association Study via Entropy

Using graphical adaptive lasso approach to construct transcription factor and microRNA's combinatorial regulatory network in breast cancer

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