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Encoding and Decoding Cellular Information through Signaling Dynamics

Cell, 2013-02, Vol.152 (5), p.945-956

2013

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p53 Dynamics Control Cell Fate

Science (American Association for the Advancement of Science), 2012-06, Vol.336 (6087), p.1440-1444

2012

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Genetic determinants of cellular addiction to DNA polymerase theta

Nature communications, 2019-09, Vol.10 (1), p.4286-13, Article 4286

2019

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Cellograph: a semi-supervised approach to analyzing multi-condition single-cell RNA-sequencing data using graph neural networks

BMC bioinformatics, 2024-01, Vol.25 (1), p.25-25, Article 25

2024

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An integrative transcriptomics approach identifies miR-503 as a candidate master regulator of the estrogen response in MCF-7 breast cancer cells

RNA (Cambridge), 2016-10, Vol.22 (10), p.1592-1603

2016

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Integrating temporal single-cell gene expression modalities for trajectory inference and disease prediction

Genome Biology, 2022-09, Vol.23 (1), p.186-32, Article 186

2022

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p53 pulses lead to distinct patterns of gene expression albeit similar DNA-binding dynamics

Nature structural & molecular biology, 2017-10, Vol.24 (10), p.840-847

2017

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Inferring the structures of signaling motifs from paired dynamic traces of single cells

PLoS computational biology, 2021-02, Vol.17 (2), p.e1008657-e1008657

2021

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A Proximal-to-Distal Survey of Healthy Adult Human Small Intestine and Colon Epithelium by Single-Cell Transcriptomics

Cellular and molecular gastroenterology and hepatology, 2022-01, Vol.13 (5), p.1554-1589

2022

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Orchestration of DNA Damage Checkpoint Dynamics across the Human Cell Cycle

Cell systems, 2017-11, Vol.5 (5), p.445-459.e5

2017

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DELVE: feature selection for preserving biological trajectories in single-cell data

Nature communications, 2024-03, Vol.15 (1), p.2765-2765, Article 2765

2024

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The molecular architecture of cell cycle arrest

Molecular systems biology, 2022-09, Vol.18 (9), p.e11087-n/a

2022

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Rapid DNA replication origin licensing protects stem cell pluripotency

eLife, 2017-11, Vol.6

2017

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Decoding the Insulin Signal

Molecular cell, 2012-06, Vol.46 (6), p.715-716

2012

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Cyclin F drives proliferation through SCF-dependent degradation of the retinoblastoma-like tumor suppressor p130/RBL2

eLife, 2021-12, Vol.10

2021

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Chemical screen for epigenetic barriers to single allele activation of Oct4

Stem cell research, 2019-07, Vol.38, p.101470-101470, Article 101470

2019

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Dual inhibition of DNA-PK and DNA polymerase theta overcomes radiation resistance induced by p53 deficiency

NAR cancer, 2020-12, Vol.2 (4)

2020

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Accurate delineation of cell cycle phase transitions in living cells with PIP-FUCCI

Cell cycle (Georgetown, Tex.), 2018-11, Vol.17 (21-22), p.2496-2516

2018

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Multi-scale imaging and informatics pipeline for in situ pluripotent stem cell analysis

PloS one, 2014-12, Vol.9 (12), p.e116037-e116037

2014

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The consequences of differential origin licensing dynamics in distinct chromatin environments

Nucleic acids research, 2022-09, Vol.50 (17), p.9601-9620

2022

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Bistable switches as integrators and actuators during cell cycle progression

FEBS letters, 2019-10, Vol.593 (20), p.2805-2816

2019

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Evidence that the human cell cycle is a series of uncoupled, memoryless phases

Molecular systems biology, 2019-03, Vol.15 (3), p.e8604-n/a

2019

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Steady-state kinetic modeling constrains cellular resting states and dynamic behavior

PLoS computational biology, 2009-03, Vol.5 (3), p.e1000298-e1000298

2009

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MRE11 liberates cGAS from nucleosome sequestration during tumorigenesis

Nature (London), 2024-01, Vol.625 (7995), p.585-592

2024

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Reprogramming favors the elite

Science (American Association for the Advancement of Science), 2019-04, Vol.364 (6438), p.330-331

2019

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Encoding and Decoding Cellular Information through Signaling Dynamics

p53 Dynamics Control Cell Fate

Genetic determinants of cellular addiction to DNA polymerase theta

Cellograph: a semi-supervised approach to analyzing multi-condition single-cell RNA-sequencing data using graph neural networks

An integrative transcriptomics approach identifies miR-503 as a candidate master regulator of the estrogen response in MCF-7 breast cancer cells

Integrating temporal single-cell gene expression modalities for trajectory inference and disease prediction

p53 pulses lead to distinct patterns of gene expression albeit similar DNA-binding dynamics

Inferring the structures of signaling motifs from paired dynamic traces of single cells

A Proximal-to-Distal Survey of Healthy Adult Human Small Intestine and Colon Epithelium by Single-Cell Transcriptomics

Orchestration of DNA Damage Checkpoint Dynamics across the Human Cell Cycle

DELVE: feature selection for preserving biological trajectories in single-cell data

The molecular architecture of cell cycle arrest

Rapid DNA replication origin licensing protects stem cell pluripotency

Decoding the Insulin Signal

Cyclin F drives proliferation through SCF-dependent degradation of the retinoblastoma-like tumor suppressor p130/RBL2

Chemical screen for epigenetic barriers to single allele activation of Oct4

Dual inhibition of DNA-PK and DNA polymerase theta overcomes radiation resistance induced by p53 deficiency

Accurate delineation of cell cycle phase transitions in living cells with PIP-FUCCI

Multi-scale imaging and informatics pipeline for in situ pluripotent stem cell analysis

The consequences of differential origin licensing dynamics in distinct chromatin environments

Bistable switches as integrators and actuators during cell cycle progression

Evidence that the human cell cycle is a series of uncoupled, memoryless phases

Steady-state kinetic modeling constrains cellular resting states and dynamic behavior

MRE11 liberates cGAS from nucleosome sequestration during tumorigenesis

Reprogramming favors the elite

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