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Automatic identification and annotation of MYB gene family members in plants

BMC genomics, 2022-03, Vol.23 (1), p.220-220, Article 220

Pucker, Boas

2022

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Apiaceae FNS I originated from F3H through tandem gene duplication

PloS one, 2023-01, Vol.18 (1), p.e0280155

2023

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Medicinal plant genomics

BMC genomics, 2023-08, Vol.24 (1), p.429-429, Article 429

2023

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Automatic annotation of the bHLH gene family in plants

BMC genomics, 2023-12, Vol.24 (1), p.780-780, Article 780

2023

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Large scale genomic rearrangements in selected Arabidopsis thaliana T-DNA lines are caused by T-DNA insertion mutagenesis

BMC genomics, 2021-08, Vol.22 (1), p.599-21, Article 599

2021

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The R2R3-MYB gene family in banana (Musa acuminata): Genome-wide identification, classification and expression patterns

PloS one, 2020-10, Vol.15 (10), p.e0239275-e0239275

2020

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KIPEs3: Automatic annotation of biosynthesis pathways

PloS one, 2023-11, Vol.18 (11), p.e0294342-e0294342

2023

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The negative regulator SMAX1 controls mycorrhizal symbiosis and strigolactone biosynthesis in rice

Nature communications, 2020-04, Vol.11 (1), p.2114-2114, Article 2114

2020

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The R2R3-MYB transcription factor MtMYB134 orchestrates flavonol biosynthesis in Medicago truncatula

Plant molecular biology, 2021-05, Vol.106 (1-2), p.157-172

2021

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Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes

BMC genomics, 2018-12, Vol.19 (1), p.980-980, Article 980

2018

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Genomic and transcriptomic analysis of camptothecin producing novel fungal endophyte: Alternaria burnsii NCIM 1409

Scientific reports, 2023-09, Vol.13 (1), p.14614-14614, Article 14614

2023

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Biochemistry and Molecular Basis of Intracellular Flavonoid Transport in Plants

Plants (Basel), 2022-04, Vol.11 (7), p.963

2022

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Genetic factors explaining anthocyanin pigmentation differences

BMC plant biology, 2024-07, Vol.24 (1), p.1, Article 627

2024

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The land plant‐specific MIXTA‐MYB lineage is implicated in the early evolution of the plant cuticle and the colonization of land

The New phytologist, 2021-02, Vol.229 (4), p.2324-2338

2021

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The evidence for anthocyanins in the betalain-pigmented genus Hylocereus is weak

BMC genomics, 2022-11, Vol.23 (1), p.1-739, Article 739

2022

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The evolution of betalain biosynthesis in Caryophyllales

The New phytologist, 2019-10, Vol.224 (1), p.71-85

2019

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Repeat turnover meets stable chromosomes: repetitive DNA sequences mark speciation and gene pool boundaries in sugar beet and wild beets

The Plant journal : for cell and molecular biology, 2024-04, Vol.118 (1), p.171-190

2024

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Animal, Fungi, and Plant Genome Sequences Harbor Different Non-Canonical Splice Sites

Cells (Basel, Switzerland), 2020-02, Vol.9 (2), p.458

2020

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Automatic Identification of Players in the Flavonoid Biosynthesis with Application on the Biomedicinal Plant Croton tiglium

Plants (Basel), 2020-08, Vol.9 (9), p.1103

2020

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Editorial: Genomics and gene editing of orphan plants

Frontiers in plant science, 2023-09, Vol.14, p.1277625-1277625

2023

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Three R2R3-MYB transcription factors from banana (Musa acuminata) activate structural anthocyanin biosynthesis genes as part of an MBW complex

BMC research notes, 2023-06, Vol.16 (1), p.103-103, Article 103

2023

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Phylogenetic placement of Ceratophyllum submersum based on a complete plastome sequence derived from nanopore long read sequencing data

BMC research notes, 2023-08, Vol.16 (1), p.1-187, Article 187

2023

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The reuse of public datasets in the life sciences: potential risks and rewards

PeerJ (San Francisco, CA), 2020-09, Vol.8, p.e9954-e9954, Article e9954

2020

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A chromosome-level sequence assembly reveals the structure of the Arabidopsis thaliana Nd-1 genome and its gene set

PloS one, 2019-05, Vol.14 (5), p.e0216233-e0216233

2019

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Multiple mechanisms explain loss of anthocyanins from betalain‐pigmented Caryophyllales, including repeated wholesale loss of a key anthocyanidin synthesis enzyme

The New phytologist, 2024-01, Vol.241 (1), p.471-489

2024

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Automatic identification and annotation of MYB gene family members in plants

Apiaceae FNS I originated from F3H through tandem gene duplication

Medicinal plant genomics

Automatic annotation of the bHLH gene family in plants

Large scale genomic rearrangements in selected Arabidopsis thaliana T-DNA lines are caused by T-DNA insertion mutagenesis

The R2R3-MYB gene family in banana (Musa acuminata): Genome-wide identification, classification and expression patterns

KIPEs3: Automatic annotation of biosynthesis pathways

The negative regulator SMAX1 controls mycorrhizal symbiosis and strigolactone biosynthesis in rice

The R2R3-MYB transcription factor MtMYB134 orchestrates flavonol biosynthesis in Medicago truncatula

Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes

Genomic and transcriptomic analysis of camptothecin producing novel fungal endophyte: Alternaria burnsii NCIM 1409

Biochemistry and Molecular Basis of Intracellular Flavonoid Transport in Plants

Genetic factors explaining anthocyanin pigmentation differences

The land plant‐specific MIXTA‐MYB lineage is implicated in the early evolution of the plant cuticle and the colonization of land

The evidence for anthocyanins in the betalain-pigmented genus Hylocereus is weak

The evolution of betalain biosynthesis in Caryophyllales

Repeat turnover meets stable chromosomes: repetitive DNA sequences mark speciation and gene pool boundaries in sugar beet and wild beets

Animal, Fungi, and Plant Genome Sequences Harbor Different Non-Canonical Splice Sites

Automatic Identification of Players in the Flavonoid Biosynthesis with Application on the Biomedicinal Plant Croton tiglium

Editorial: Genomics and gene editing of orphan plants

Three R2R3-MYB transcription factors from banana (Musa acuminata) activate structural anthocyanin biosynthesis genes as part of an MBW complex

Phylogenetic placement of Ceratophyllum submersum based on a complete plastome sequence derived from nanopore long read sequencing data

The reuse of public datasets in the life sciences: potential risks and rewards

A chromosome-level sequence assembly reveals the structure of the Arabidopsis thaliana Nd-1 genome and its gene set

Multiple mechanisms explain loss of anthocyanins from betalain‐pigmented Caryophyllales, including repeated wholesale loss of a key anthocyanidin synthesis enzyme

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