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Prediction of m6A and m5C at single-molecule resolution reveals a transcriptome-wide co-occurrence of RNA modifications

Nature communications, 2024-05, Vol.15 (1), p.3899-3899, Article 3899

2024

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From cis-regulatory elements to complex RNPs and back

Cold Spring Harbor perspectives in biology, 2012-07, Vol.4 (7), p.a012245-a012245

2012

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Starting the protein synthesis machine: eukaryotic translation initiation

BioEssays, 2003-12, Vol.25 (12), p.1201-1211

2003

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Role of miRNAs and alternative mRNA 3′-end cleavage and polyadenylation of their mRNA targets in cardiomyocyte hypertrophy

Biochimica et biophysica acta, 2016-05, Vol.1859 (5), p.744-756

2016

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Picornavirus IRESes and the poly(A) tail jointly promote cap-independent translation in a mammalian cell-free system

RNA (Cambridge), 2000-12, Vol.6 (12), p.1781-1790, Article S1355838200001679

2000

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Circular RNA is expressed across the eukaryotic tree of life

PloS one, 2014-03, Vol.9 (6), p.e90859-e90859

2014

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Circular RNAs are the predominant transcript isoform from hundreds of human genes in diverse cell types

PloS one, 2012-02, Vol.7 (2), p.e30733-e30733

2012

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Transcriptome-wide mapping of pseudouridines: pseudouridine synthases modify specific mRNAs in S. cerevisiae

PloS one, 2014-10, Vol.9 (10), p.e110799-e110799

2014

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Variant analysis of 1,040 SARS-CoV-2 genomes

PloS one, 2020-11, Vol.15 (11), p.e0241535-e0241535

2020

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Whole transcriptome sequencing reveals gene expression and splicing differences in brain regions affected by Alzheimer's disease

PloS one, 2011-01, Vol.6 (1), p.e16266-e16266

2011

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Global cataloguing of variations in untranslated regions of viral genome and prediction of key host RNA binding protein-microRNA interactions modulating genome stability in SARS-CoV-2

PloS one, 2020-08, Vol.15 (8), p.e0237559-e0237559

2020

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miR-132/212 knockout mice reveal roles for these miRNAs in regulating cortical synaptic transmission and plasticity

PloS one, 2013-04, Vol.8 (4), p.e62509-e62509

2013

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Eukaryotic rRNA Modification by Yeast 5-Methylcytosine-Methyltransferases and Human Proliferation-Associated Antigen p120

PloS one, 2015-07, Vol.10 (7), p.e0133321-e0133321

2015

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Genome-wide identification and functional analysis of circRNAs in Zea mays

PloS one, 2018-12, Vol.13 (12), p.e0202375-e0202375

2018

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Immuno-Northern Blotting: Detection of RNA Modifications by Using Antibodies against Modified Nucleosides

PloS one, 2015-11, Vol.10 (11), p.e0143756-e0143756

2015

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Antitumor activity and mechanism of action of the cyclopenta[b]benzofuran, silvestrol

PloS one, 2009-04, Vol.4 (4), p.e5223-e5223

2009

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Pervasive mRNA uridylation in fission yeast is catalysed by both Cid1 and Cid16 terminal uridyltransferases

PloS one, 2023-05, Vol.18 (5), p.e0285576-e0285576

2023

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Interplay between SERCA, 4E-BP, and eIF4E in the Drosophila heart

PloS one, 2022-05, Vol.17 (5), p.e0267156-e0267156

2022

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The RNA-binding protein NANOS1 controls hippocampal synaptogenesis

PloS one, 2023-04, Vol.18 (4), p.e0284589-e0284589

2023

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HSV-1 and influenza infection induce linear and circular splicing of the long NEAT1 isoform

PloS one, 2022-10, Vol.17 (10), p.e0276467-e0276467

2022

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Sources of variation in cell-type RNA-Seq profiles

PloS one, 2020-09, Vol.15 (9), p.e0239495-e0239495

2020

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Ontogenic mRNA expression of RNA modification writers, erasers, and readers in mouse liver

PloS one, 2019-12, Vol.14 (12), p.e0227102-e0227102

2019

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The EIF4E1-4EIP cap-binding complex of Trypanosoma brucei interacts with the terminal uridylyl transferase TUT3

PloS one, 2021-11, Vol.16 (11), p.e0258903-e0258903

2021

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Newly synthesized mRNA escapes translational repression during the acute phase of the mammalian unfolded protein response

PloS one, 2022-08, Vol.17 (8), p.e0271695-e0271695

2022

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Modulating myoblast differentiation with RNA-based controllers

PloS one, 2022-09, Vol.17 (9), p.e0275298-e0275298

2022

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