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Emerging accessibility patterns in long telomeric overhangs

Proceedings of the National Academy of Sciences - PNAS, 2022-07, Vol.119 (30), p.e2202317119-e2202317119

2022

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Coarse-grained molecular simulations of allosteric cooperativity

The Journal of chemical physics, 2016-03, Vol.144 (10), p.105101-105101

2016

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Inherent flexibility determines the transition mechanisms of the EF-hands of calmodulin

Proceedings of the National Academy of Sciences - PNAS, 2009-02, Vol.106 (7), p.2104-2109

2009

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Comparing allosteric transitions in the domains of calmodulin through coarse-grained simulations

The Journal of chemical physics, 2016-03, Vol.144 (10), p.105102-105102

2016

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Speeding Molecular Recognition by Using the Folding Funnel: The Fly-Casting Mechanism

Proceedings of the National Academy of Sciences - PNAS, 2000-08, Vol.97 (16), p.8868-8873

2000

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Cooperativity and protein folding rates

Current opinion in structural biology, 2010-02, Vol.20 (1), p.11-15

Portman, John J

2010

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Allostery and Folding of the N‑terminal Receiver Domain of Protein NtrC

The journal of physical chemistry. B, 2013-10, Vol.117 (42), p.13182-13193

2013

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Conformational flexibility and the mechanisms of allosteric transitions in topologically similar proteins

The Journal of chemical physics, 2011-08, Vol.135 (7), p.075104-075104-9

2011

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Inherent flexibility and protein function: The open/closed conformational transition in the N-terminal domain of calmodulin

The Journal of chemical physics, 2008-05, Vol.128 (20), p.205104-205104-9

2008

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Excluded volume, local structural cooperativity, and the polymer physics of protein folding rates

Proceedings of the National Academy of Sciences - PNAS, 2007-06, Vol.104 (26), p.10841-10846

2007

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Capillarity-Like Growth of Protein Folding Nuclei

Proceedings of the National Academy of Sciences - PNAS, 2008-08, Vol.105 (32), p.11164-11169

2008

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Microscopic theory of protein folding rates. II. Local reaction coordinates and chain dynamics

The Journal of chemical physics, 2001-03, Vol.114 (11), p.5082-5096

2001

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The Folding Mechanism and Kinetics of the Domains of α-Spectrin: Results from a Variational Model

Biophysical journal, 2017-02, Vol.112 (3), p.497a-498a

2017

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Variationally Determined Free Energy Profiles for Structural Models of Proteins: Characteristic Temperatures for Folding and Trapping

The journal of physical chemistry. B, 2008-05, Vol.112 (19), p.6074-6082

2008

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Calculating Multi-Body Cooperativity Parameters for Calcium Binding to Calmodulin through Coarse-Grained Simulations

Biophysical journal, 2016-02, Vol.110 (3), p.55a-55a

2016

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Emerging accessibility patterns in long telomeric overhangs

Biophysical journal, 2022-02, Vol.121 (3), p.67a-67a

2022

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Exploring the Role of Flexibility in Binding Kinetics and Affinity of pKID-Kix through Coarse Grained Simulations

Biophysical journal, 2017-02, Vol.112 (3), p.208a-208a

2017

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Influence of Desolvation Barriers in Coupled Folding and Binding Kinetics of pKID-KIX

Biophysical journal, 2014-01, Vol.106 (2), p.482a-482a

2014

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Exploring Kinetic Scenarios for Allosteric Transitions of Calmodulin through Coarse-Grained Simulations

Biophysical journal, 2013-01, Vol.104 (2), p.58a-58a

2013

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Vanishing tails and a resilient mesophase: columnar liquid crystals in the limit of short tails

Materials advances, 2023-09, Vol.4 (18), p.4129-4137

2023

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Complementary Variational Approximations for Intermittency and Reaction Dynamics in Fluctuating Environments

The journal of physical chemistry. A, Molecules, spectroscopy, kinetics, environment, & general theory, 1999-12, Vol.103 (49), p.10602-10610

1999

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Conformational Flexibility and the Mechanism of Allosteric Transitions in Calmodulin

Biophysical journal, 2012-01, Vol.102 (3), p.449a-449a

2012

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Non-Gaussian dynamics from a simulation of a short peptide: Loop closure rates and effective diffusion coefficients

The Journal of chemical physics, 2003-02, Vol.118 (5), p.2381-2391

Portman, John J.

2003

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Allostery and Folding Mechanisms of the N-Terminal Receiver Domain of Protein NTRC

Biophysical journal, 2011-02, Vol.100 (3), p.18a-18a

2011

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Peptide folding simulations

Current opinion in structural biology, 2003-04, Vol.13 (2), p.168-174

2003

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Emerging accessibility patterns in long telomeric overhangs

Coarse-grained molecular simulations of allosteric cooperativity

Inherent flexibility determines the transition mechanisms of the EF-hands of calmodulin

Comparing allosteric transitions in the domains of calmodulin through coarse-grained simulations

Speeding Molecular Recognition by Using the Folding Funnel: The Fly-Casting Mechanism

Cooperativity and protein folding rates

Allostery and Folding of the N‑terminal Receiver Domain of Protein NtrC

Conformational flexibility and the mechanisms of allosteric transitions in topologically similar proteins

Inherent flexibility and protein function: The open/closed conformational transition in the N-terminal domain of calmodulin

Excluded volume, local structural cooperativity, and the polymer physics of protein folding rates

Capillarity-Like Growth of Protein Folding Nuclei

Microscopic theory of protein folding rates. II. Local reaction coordinates and chain dynamics

The Folding Mechanism and Kinetics of the Domains of α-Spectrin: Results from a Variational Model

Variationally Determined Free Energy Profiles for Structural Models of Proteins: Characteristic Temperatures for Folding and Trapping

Calculating Multi-Body Cooperativity Parameters for Calcium Binding to Calmodulin through Coarse-Grained Simulations

Emerging accessibility patterns in long telomeric overhangs

Exploring the Role of Flexibility in Binding Kinetics and Affinity of pKID-Kix through Coarse Grained Simulations

Influence of Desolvation Barriers in Coupled Folding and Binding Kinetics of pKID-KIX

Exploring Kinetic Scenarios for Allosteric Transitions of Calmodulin through Coarse-Grained Simulations

Vanishing tails and a resilient mesophase: columnar liquid crystals in the limit of short tails

Complementary Variational Approximations for Intermittency and Reaction Dynamics in Fluctuating Environments

Conformational Flexibility and the Mechanism of Allosteric Transitions in Calmodulin

Non-Gaussian dynamics from a simulation of a short peptide: Loop closure rates and effective diffusion coefficients

Allostery and Folding Mechanisms of the N-Terminal Receiver Domain of Protein NTRC

Peptide folding simulations

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