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Three-dimensional organization and dynamics of the genome

Cell biology and toxicology, 2018-10, Vol.34 (5), p.381-404

2018

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Three-dimensional Epigenome Statistical Model: Genome-wide Chromatin Looping Prediction

Scientific reports, 2018-03, Vol.8 (1), p.5217-11, Article 5217

2018

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Can we trust docking results? Evaluation of seven commonly used programs on PDBbind database

Journal of computational chemistry, 2011-03, Vol.32 (4), p.742-755

2011

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CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription

Cell, 2015-12, Vol.163 (7), p.1611-1627

2015

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Spatial chromatin architecture alteration by structural variations in human genomes at the population scale

Genome Biology, 2019-07, Vol.20 (1), p.148-148, Article 148

2019

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Multiscale molecular modeling of chromatin with MultiMM: From nucleosomes to the whole genome

Computational and structural biotechnology journal, 2024-12, Vol.23, p.3537-3548

2024

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Editorial: Unveiling novel aspects of SARS-CoV-2 to combat COVID-19

Frontiers in genetics, 2024-02, Vol.15, p.1383640-1383640

2024

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Ultrastructural visualization of 3D chromatin folding using volume electron microscopy and DNA in situ hybridization

Nature communications, 2020-05, Vol.11 (1), p.2120-2120, Article 2120

2020

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Genomic Marks Associated with Chromatin Compartments in the CTCF, RNAPII Loop and Genomic Windows

International journal of molecular sciences, 2021-10, Vol.22 (21), p.11591

2021

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Enhanced performance of gene expression predictive models with protein-mediated spatial chromatin interactions

Scientific reports, 2023-07, Vol.13 (1), p.11693-11693, Article 11693

2023

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Proceedings of International Conference on Frontiers in Computing and Systems: Comsys 2022

1, 2023

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COVID-DeepPredictor: Recurrent Neural Network to Predict SARS-CoV-2 and Other Pathogenic Viruses

Frontiers in genetics, 2021-02, Vol.12, p.569120-569120

2021

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The 3D enhancer network of the developing T cell genome is shaped by SATB1

Nature communications, 2022-11, Vol.13 (1), p.6954-6954, Article 6954

2022

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TBC1D24 emerges as an important contributor to progressive postlingual dominant hearing loss

Scientific reports, 2021-05, Vol.11 (1), p.10300-10300, Article 10300

2021

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Editorial: SARS-CoV-2: From Genetic Variability to Vaccine Design

Frontiers in genetics, 2022-08, Vol.13, p.960107-960107

2022

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Structural Variants and Implicated Processes Associated with Familial Tourette Syndrome

International journal of molecular sciences, 2024-06, Vol.25 (11), p.5758

2024

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AMS 3.0: prediction of post-translational modifications

BMC bioinformatics, 2010-04, Vol.11 (1), p.210-210, Article 210

2010

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PartSeg: a tool for quantitative feature extraction from 3D microscopy images for dummies

BMC bioinformatics, 2021-02, Vol.22 (1), p.72-72, Article 72

2021

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Super-resolution visualization of chromatin loop folding in human lymphoblastoid cells using interferometric photoactivated localization microscopy

Scientific reports, 2022-05, Vol.12 (1), p.8582-8582, Article 8582

2022

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Detailed Mechanism of Squalene Epoxidase Inhibition by Terbinafine

Journal of chemical information and modeling, 2011-02, Vol.51 (2), p.455-462

2011

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Quantitative 3-D morphometric analysis of individual dendritic spines

Scientific reports, 2018-02, Vol.8 (1), p.3545-13, Article 3545

2018

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Genome-Wide Analysis to Identify Palindromes, Mirror and Inverted Repeats in SARS-CoV-2, MERS-CoV and SARS-CoV-1

IEEE access, 2022, Vol.10, p.23708-23715

2022

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Exploring 3D chromatin contacts in gene regulation: The evolution of approaches for the identification of functional enhancer-promoter interaction

Computational and structural biotechnology journal, 2020-01, Vol.18, p.558-570

2020

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Clinical and molecular characteristics of newly reported mitochondrial disease entity caused by biallelic PARS2 mutations

Journal of human genetics, 2018-04, Vol.63 (4), p.473-485

2018

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Proceedings of International Conference on Frontiers in Computing and Systems: Comsys 2021

1, 2022

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Three-dimensional organization and dynamics of the genome

Three-dimensional Epigenome Statistical Model: Genome-wide Chromatin Looping Prediction

Can we trust docking results? Evaluation of seven commonly used programs on PDBbind database

CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription

Spatial chromatin architecture alteration by structural variations in human genomes at the population scale

Multiscale molecular modeling of chromatin with MultiMM: From nucleosomes to the whole genome

Editorial: Unveiling novel aspects of SARS-CoV-2 to combat COVID-19

Ultrastructural visualization of 3D chromatin folding using volume electron microscopy and DNA in situ hybridization

Genomic Marks Associated with Chromatin Compartments in the CTCF, RNAPII Loop and Genomic Windows

Enhanced performance of gene expression predictive models with protein-mediated spatial chromatin interactions

Proceedings of International Conference on Frontiers in Computing and Systems: Comsys 2022

COVID-DeepPredictor: Recurrent Neural Network to Predict SARS-CoV-2 and Other Pathogenic Viruses

The 3D enhancer network of the developing T cell genome is shaped by SATB1

TBC1D24 emerges as an important contributor to progressive postlingual dominant hearing loss

Editorial: SARS-CoV-2: From Genetic Variability to Vaccine Design

Structural Variants and Implicated Processes Associated with Familial Tourette Syndrome

AMS 3.0: prediction of post-translational modifications

PartSeg: a tool for quantitative feature extraction from 3D microscopy images for dummies

Super-resolution visualization of chromatin loop folding in human lymphoblastoid cells using interferometric photoactivated localization microscopy

Detailed Mechanism of Squalene Epoxidase Inhibition by Terbinafine

Quantitative 3-D morphometric analysis of individual dendritic spines

Genome-Wide Analysis to Identify Palindromes, Mirror and Inverted Repeats in SARS-CoV-2, MERS-CoV and SARS-CoV-1

Exploring 3D chromatin contacts in gene regulation: The evolution of approaches for the identification of functional enhancer-promoter interaction

Clinical and molecular characteristics of newly reported mitochondrial disease entity caused by biallelic PARS2 mutations

Proceedings of International Conference on Frontiers in Computing and Systems: Comsys 2021

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