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Understanding Tissue-Specific Gene Regulation

Cell reports (Cambridge), 2017-10, Vol.21 (4), p.1077-1088

2017

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Exploiting Synthetic Lethality for the Therapy of ABC Diffuse Large B Cell Lymphoma

Cancer cell, 2012-06, Vol.21 (6), p.723-737

2012

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Bipartite Community Structure of eQTLs

PLoS computational biology, 2016-09, Vol.12 (9), p.e1005033-e1005033

2016

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Protein kinases PknA and PknB independently and coordinately regulate essential Mycobacterium tuberculosis physiologies and antimicrobial susceptibility

PLoS pathogens, 2020-04, Vol.16 (4), p.e1008452

2020

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Gene Targeting in Disease Networks

Frontiers in genetics, 2021-04, Vol.12, p.649942-649942

2021

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Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data

BMC bioinformatics, 2017-10, Vol.18 (1), p.437-437, Article 437

2017

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Regulatory network changes between cell lines and their tissues of origin

BMC genomics, 2017-09, Vol.18 (1), p.723-723, Article 723

2017

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The Network Zoo: a multilingual package for the inference and analysis of gene regulatory networks

Genome Biology, 2023-03, Vol.24 (1), p.45-45, Article 45

2023

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Alternative poly-adenylation modulates α1-antitrypsin expression in chronic obstructive pulmonary disease

PLoS genetics, 2021-11, Vol.17 (11), p.e1009912

2021

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Identification of an emphysema-associated genetic variant near TGFB2 with regulatory effects in lung fibroblasts

eLife, 2019-07, Vol.8

2019

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Ensemble genomic analysis in human lung tissue identifies novel genes for chronic obstructive pulmonary disease

Human genomics, 2018-01, Vol.12 (1), p.1-1, Article 1

2018

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Multi-omic regulatory networks capture downstream effects of kinase inhibition in Mycobacterium tuberculosis

NPJ systems biology and applications, 2021-01, Vol.7 (1), p.8-7, Article 8

2021

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Echo phenomena in large systems of coupled oscillators

Chaos (Woodbury, N.Y.), 2008-09, Vol.18 (3), p.037115-037115-9

2008

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Histopathological Image QTL Discovery of Immune Infiltration Variants

iScience, 2018-07, Vol.5, p.80-89

2018

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Predicting genotype-specific gene regulatory networks

Genome research, 2022-03, Vol.32 (3), p.524-533

2022

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Nongenic cancer-risk SNPs affect oncogenes, tumour-suppressor genes, and immune function

British journal of cancer, 2020-02, Vol.122 (4), p.569-577

2020

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Sex Differences in Gene Expression and Regulatory Networks across 29 Human Tissues

Cell reports (Cambridge), 2020-06, Vol.31 (12), p.107795-107795, Article 107795

2020

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GRAND: a database of gene regulatory network models across human conditions

Nucleic acids research, 2022-01, Vol.50 (D1), p.D610-D621

2022

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Exploring regulation in tissues with eQTL networks

Proceedings of the National Academy of Sciences - PNAS, 2017-09, Vol.114 (37), p.E7841-E7850

2017

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An online notebook resource for reproducible inference, analysis and publication of gene regulatory networks

Nature methods, 2022-05, Vol.19 (5), p.511-513

2022

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Cigarette smoking-associated isoform switching and 3′ UTR lengthening via alternative polyadenylation

Genomics (San Diego, Calif.), 2021-11, Vol.113 (6), p.4184-4195

2021

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Alternative poly-adenylation modulates [alpha]1-antitrypsin expression in chronic obstructive pulmonary disease

PLoS genetics, 2021-11, Vol.17 (11)

2021

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Connectivity in eQTL networks dictates reproducibility and genomic properties

Cell reports methods, 2022-05, Vol.2 (5), p.100218, Article 100218

2022

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Thermodynamic measures of cancer: Gibbs free energy and entropy of protein–protein interactions

Journal of biological physics, 2016-06, Vol.42 (3), p.339-350

2016

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Understanding Tissue-Specific Gene Regulation

Exploiting Synthetic Lethality for the Therapy of ABC Diffuse Large B Cell Lymphoma

Bipartite Community Structure of eQTLs

Protein kinases PknA and PknB independently and coordinately regulate essential Mycobacterium tuberculosis physiologies and antimicrobial susceptibility

Gene Targeting in Disease Networks

Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data

Regulatory network changes between cell lines and their tissues of origin

The Network Zoo: a multilingual package for the inference and analysis of gene regulatory networks

Alternative poly-adenylation modulates α1-antitrypsin expression in chronic obstructive pulmonary disease

Identification of an emphysema-associated genetic variant near TGFB2 with regulatory effects in lung fibroblasts

Ensemble genomic analysis in human lung tissue identifies novel genes for chronic obstructive pulmonary disease

Multi-omic regulatory networks capture downstream effects of kinase inhibition in Mycobacterium tuberculosis

Echo phenomena in large systems of coupled oscillators

Histopathological Image QTL Discovery of Immune Infiltration Variants

Predicting genotype-specific gene regulatory networks

Nongenic cancer-risk SNPs affect oncogenes, tumour-suppressor genes, and immune function

Sex Differences in Gene Expression and Regulatory Networks across 29 Human Tissues

GRAND: a database of gene regulatory network models across human conditions

Exploring regulation in tissues with eQTL networks

An online notebook resource for reproducible inference, analysis and publication of gene regulatory networks

Cigarette smoking-associated isoform switching and 3′ UTR lengthening via alternative polyadenylation

Alternative poly-adenylation modulates [alpha]1-antitrypsin expression in chronic obstructive pulmonary disease

Connectivity in eQTL networks dictates reproducibility and genomic properties

Thermodynamic measures of cancer: Gibbs free energy and entropy of protein–protein interactions

Multisystem Analysis of Mycobacterium tuberculosis Reveals Kinase-Dependent Remodeling of the Pathogen-Environment Interface

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