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BOSO: A novel feature selection algorithm for linear regression with high-dimensional data

PLoS computational biology, 2022-05, Vol.18 (5), p.e1010180-e1010180

2022

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A network-based approach to integrate nutrient microenvironment in the prediction of synthetic lethality in cancer metabolism

PLoS computational biology, 2022-03, Vol.18 (3), p.e1009395-e1009395

2022

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An in-silico approach to predict and exploit synthetic lethality in cancer metabolism

Nature communications, 2017-09, Vol.8 (1), p.459-9, Article 459

2017

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gMCS: fast computation of genetic minimal cut sets in large networks

Bioinformatics, 2019-02, Vol.35 (3), p.535-537

2019

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Joint analysis of miRNA and mRNA expression data

Briefings in bioinformatics, 2013-05, Vol.14 (3), p.263-278

2013

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Computing the shortest elementary flux modes in genome-scale metabolic networks

Bioinformatics, 2009-12, Vol.25 (23), p.3158-3165

2009

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An extended reconstruction of human gut microbiota metabolism of dietary compounds

Nature communications, 2021-08, Vol.12 (1), p.4728-4728, Article 4728

2021

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New Inference Rules for Max-SAT

The Journal of artificial intelligence research, 2007-01, Vol.30, p.321-359

2007

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Assessment of FBA Based Gene Essentiality Analysis in Cancer with a Fast Context-Specific Network Reconstruction Method

PloS one, 2016-05, Vol.11 (5), p.e0154583-e0154583

2016

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Synthetic lethality in large-scale integrated metabolic and regulatory network models of human cells

NPJ systems biology and applications, 2023-07, Vol.9 (1), p.32-32, Article 32

2023

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In-silico prediction of key metabolic differences between two non-small cell lung cancer subtypes

PloS one, 2014-08, Vol.9 (8), p.e103998-e103998

2014

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Extending PROXIMAL to predict degradation pathways of phenolic compounds in the human gut microbiota

NPJ systems biology and applications, 2024-05, Vol.10 (1), p.56-56, Article 56

2024

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Path finding methods accounting for stoichiometry in metabolic networks

Genome biology, 2011-05, Vol.12 (5), p.R49-R49

2011

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Adaptation of the Human Gut Microbiota Metabolic Network During the First Year After Birth

Frontiers in microbiology, 2019-04, Vol.10, p.848-848

2019

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Advances in network-based metabolic pathway analysis and gene expression data integration

Briefings in bioinformatics, 2015-03, Vol.16 (2), p.265-279

2015

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Effect of Freezing on Gut Microbiota Composition and Functionality for In Vitro Fermentation Experiments

Nutrients, 2021-06, Vol.13 (7), p.2207

2021

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Prediction of degradation pathways of phenolic compounds in the human gut microbiota through enzyme promiscuity methods

NPJ systems biology and applications, 2022-07, Vol.8 (1), p.24-24, Article 24

2022

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DrugSniper, a Tool to Exploit Loss-Of-Function Screens, Identifies CREBBP as a Predictive Biomarker of VOLASERTIB in Small Cell Lung Carcinoma (SCLC)

Cancers, 2020-07, Vol.12 (7), p.1824

2020

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Exploring metabolic pathways in genome-scale networks via generating flux modes

Bioinformatics (Oxford, England), 2011-02, Vol.27 (4), p.534-540

2011

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gMCSpy: Efficient and accurate computation of genetic minimal cut sets in python

Bioinformatics (Oxford, England), 2024-06, Vol.40 (6)

2024

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A critical examination of stoichiometric and path-finding approaches to metabolic pathways

Briefings in bioinformatics, 2008-09, Vol.9 (5), p.422-436

2008

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Direct calculation of minimal cut sets involving a specific reaction knock-out

Bioinformatics, 2016-07, Vol.32 (13), p.2001-2007

2016

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Direct calculation of elementary flux modes satisfying several biological constraints in genome-scale metabolic networks

Bioinformatics (Oxford, England), 2014-08, Vol.30 (15), p.2197-2203

2014

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Recovering metabolic pathways via optimization

Bioinformatics, 2007-01, Vol.23 (1), p.92-98

2007

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New analytical approach to the insulator–metal transition in conductive polyaniline

Synthetic metals, 2010-08, Vol.160 (15), p.1668-1671

2010

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BOSO: A novel feature selection algorithm for linear regression with high-dimensional data

A network-based approach to integrate nutrient microenvironment in the prediction of synthetic lethality in cancer metabolism

An in-silico approach to predict and exploit synthetic lethality in cancer metabolism

gMCS: fast computation of genetic minimal cut sets in large networks

Joint analysis of miRNA and mRNA expression data

Computing the shortest elementary flux modes in genome-scale metabolic networks

An extended reconstruction of human gut microbiota metabolism of dietary compounds

New Inference Rules for Max-SAT

Assessment of FBA Based Gene Essentiality Analysis in Cancer with a Fast Context-Specific Network Reconstruction Method

Synthetic lethality in large-scale integrated metabolic and regulatory network models of human cells

In-silico prediction of key metabolic differences between two non-small cell lung cancer subtypes

Extending PROXIMAL to predict degradation pathways of phenolic compounds in the human gut microbiota

Path finding methods accounting for stoichiometry in metabolic networks

Adaptation of the Human Gut Microbiota Metabolic Network During the First Year After Birth

Advances in network-based metabolic pathway analysis and gene expression data integration

Effect of Freezing on Gut Microbiota Composition and Functionality for In Vitro Fermentation Experiments

Prediction of degradation pathways of phenolic compounds in the human gut microbiota through enzyme promiscuity methods

DrugSniper, a Tool to Exploit Loss-Of-Function Screens, Identifies CREBBP as a Predictive Biomarker of VOLASERTIB in Small Cell Lung Carcinoma (SCLC)

Exploring metabolic pathways in genome-scale networks via generating flux modes

gMCSpy: Efficient and accurate computation of genetic minimal cut sets in python

A critical examination of stoichiometric and path-finding approaches to metabolic pathways

Direct calculation of minimal cut sets involving a specific reaction knock-out

Direct calculation of elementary flux modes satisfying several biological constraints in genome-scale metabolic networks

Recovering metabolic pathways via optimization

New analytical approach to the insulator–metal transition in conductive polyaniline

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