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Interpreting Whole-Genome Sequence Analyses of Foodborne Bacteria for Regulatory Applications and Outbreak Investigations

Frontiers in microbiology, 2018-07, Vol.9, p.1482

2018

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Choice of reference sequence and assembler for alignment of Listeria monocytogenes short-read sequence data greatly influences rates of error in SNP analyses

PloS one, 2014-08, Vol.9 (8), p.e104579-e104579

2014

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An expanded inventory of conserved meiotic genes provides evidence for sex in Trichomonas vaginalis

PloS one, 2008-08, Vol.3 (8), p.e2879-e2879

2008

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Using Evolutionary Analyses to Refine Whole-Genome Sequence Match Criteria

Frontiers in microbiology, 2022-06, Vol.13, p.797997-797997

2022

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Within-species contamination of bacterial whole-genome sequence data has a greater influence on clustering analyses than between-species contamination

Genome Biology, 2019-12, Vol.20 (1), p.286-286, Article 286

2019

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Real-Time Pathogen Detection in the Era of Whole-Genome Sequencing and Big Data: Comparison of k-mer and Site-Based Methods for Inferring the Genetic Distances among Tens of Thousands of Salmonella Samples

PloS one, 2016-11, Vol.11 (11), p.e0166162-e0166162

2016

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The Listeria monocytogenes Core-Genome Sequence Typer (LmCGST): a bioinformatic pipeline for molecular characterization with next-generation sequence data

BMC microbiology, 2015-10, Vol.15 (1), p.224-224, Article 224

2015

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Genomic diversity of Salmonella enterica isolated from papaya samples collected during multiple outbreaks in 2017

Microbiology (Society for General Microbiology), 2020-05, Vol.166 (5), p.453-459

2020

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Choice of reference-guided sequence assembler and SNP caller for analysis of Listeria monocytogenes short-read sequence data greatly influences rates of error

BMC research notes, 2015-12, Vol.8 (1), p.748-748, Article 748

2015

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Genome Sequence of Listeria monocytogenes Strain HPB5415, Collected during a 2008 Listeriosis Outbreak in Canada

Genome announcements (Washington, DC), 2015-06, Vol.3 (3)

2015

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Draft Genome Sequence of Cronobacter sakazakii Clonal Complex 45 Strain HPB5174, Isolated from a Powdered Infant Formula Facility in Ireland

Genome announcements (Washington, DC), 2014-08, Vol.2 (4)

2014

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Draft Genome Sequence of Listeria monocytogenes Strain LI0521 (syn. HPB7171), Isolated in 1983 during an Outbreak in Massachusetts Caused by Contaminated Cheese

Genome announcements (Washington, DC), 2014-07, Vol.2 (4)

2014

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Genome Sequence of the Listeria monocytogenes Food Isolate HPB913, Collected in Canada in 1993

Genome announcements (Washington, DC), 2016-09, Vol.4 (5)

2016

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Genome Sequence of Listeria monocytogenes Strain HPB2088 (Serotype 1/2a), an Environmental Isolate Collected in Canada in 1994

Genome announcements (Washington, DC), 2016-08, Vol.4 (4)

2016

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Draft Genome Sequences of Two Clostridium botulinum Group II (Nonproteolytic) Type B Strains (DB-2 and KAPB-3)

Genome announcements (Washington, DC), 2014-11, Vol.2 (6)

2014

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Choice of Reference Sequence and Assembler for Alignment of Listeria monocytogenes Short-Read Sequence Data Greatly Influences Rates of Error in SNP Analyses: e104579

PloS one, 2014-08, Vol.9 (8)

2014

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Correction: An Expanded Inventory of Conserved Meiotic Genes Provides Evidence for Sex in Trichomonas vaginalis

PloS one, 2008-09, Vol.3 (9)

2008

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Correction: An Expanded Inventory of Conserved Meiotic Genes Provides Evidence for Sex in

PloS one, 2008-01, Vol.3 (9)

2008

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Genes significantly associated with lineage II food isolates of Listeria monocytogenes

BMC genomics, 2018-09, Vol.19 (1), p.708-708, Article 708

2018

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Interpreting Whole-Genome Sequence Analyses of Foodborne Bacteria for Regulatory Applications and Outbreak Investigations

Choice of reference sequence and assembler for alignment of Listeria monocytogenes short-read sequence data greatly influences rates of error in SNP analyses

An expanded inventory of conserved meiotic genes provides evidence for sex in Trichomonas vaginalis

Using Evolutionary Analyses to Refine Whole-Genome Sequence Match Criteria

Within-species contamination of bacterial whole-genome sequence data has a greater influence on clustering analyses than between-species contamination

Real-Time Pathogen Detection in the Era of Whole-Genome Sequencing and Big Data: Comparison of k-mer and Site-Based Methods for Inferring the Genetic Distances among Tens of Thousands of Salmonella Samples

The Listeria monocytogenes Core-Genome Sequence Typer (LmCGST): a bioinformatic pipeline for molecular characterization with next-generation sequence data

Genomic diversity of Salmonella enterica isolated from papaya samples collected during multiple outbreaks in 2017

Choice of reference-guided sequence assembler and SNP caller for analysis of Listeria monocytogenes short-read sequence data greatly influences rates of error

Genome Sequence of Listeria monocytogenes Strain HPB5415, Collected during a 2008 Listeriosis Outbreak in Canada

Draft Genome Sequence of Cronobacter sakazakii Clonal Complex 45 Strain HPB5174, Isolated from a Powdered Infant Formula Facility in Ireland

Draft Genome Sequence of Listeria monocytogenes Strain LI0521 (syn. HPB7171), Isolated in 1983 during an Outbreak in Massachusetts Caused by Contaminated Cheese

Genome Sequence of the Listeria monocytogenes Food Isolate HPB913, Collected in Canada in 1993

Genome Sequence of Listeria monocytogenes Strain HPB2088 (Serotype 1/2a), an Environmental Isolate Collected in Canada in 1994

Draft Genome Sequences of Two Clostridium botulinum Group II (Nonproteolytic) Type B Strains (DB-2 and KAPB-3)

Extreme genome diversity in the hyper-prevalent parasitic eukaryote Blastocystis

Choice of Reference Sequence and Assembler for Alignment of Listeria monocytogenes Short-Read Sequence Data Greatly Influences Rates of Error in SNP Analyses: e104579

Correction: An Expanded Inventory of Conserved Meiotic Genes Provides Evidence for Sex in Trichomonas vaginalis

Correction: An Expanded Inventory of Conserved Meiotic Genes Provides Evidence for Sex in

Genes significantly associated with lineage II food isolates of Listeria monocytogenes

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