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The ability to classify patients based on gene-expression data varies by algorithm and performance metric

PLoS computational biology, 2022-03, Vol.18 (3), p.e1009926-e1009926

2022

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Age-Related Differences in Cortical Thickness Vary by Socioeconomic Status

PloS one, 2016-09, Vol.11 (9), p.e0162511-e0162511

2016

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Alternative preprocessing of RNA-Sequencing data in The Cancer Genome Atlas leads to improved analysis results

Bioinformatics (Oxford, England), 2015-11, Vol.31 (22), p.3666-3672

2015

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Predicting drug sensitivity of cancer cells based on DNA methylation levels

PloS one, 2021-09, Vol.16 (9), p.e0238757

2021

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trioPhaser: using Mendelian inheritance logic to improve genomic phasing of trios

BMC bioinformatics, 2021-11, Vol.22 (1), p.1-559, Article 559

2021

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Evaluating a large language model’s ability to solve programming exercises from an introductory bioinformatics course

PLoS computational biology, 2023-09, Vol.19 (9), p.e1011511-e1011511

2023

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A cloud-based workflow to quantify transcript-expression levels in public cancer compendia

Scientific reports, 2016-12, Vol.6 (1), p.39259-39259, Article 39259

2016

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Toward a methodology for evaluating DNA variants in nuclear families

PloS one, 2021-10, Vol.16 (10), p.e0258375

2021

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Effects of germline and somatic events in candidate BRCA-like genes on breast-tumor signatures

PloS one, 2020-09, Vol.15 (9), p.e0239197-e0239197

2020

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Combating subclonal evolution of resistant cancer phenotypes

Nature communications, 2017-11, Vol.8 (1), p.1231-15, Article 1231

2017

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A Survey of Compound Heterozygous Variants in Pediatric Cancers and Structural Birth Defects

Frontiers in genetics, 2021-03, Vol.12, p.640242-640242

2021

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Compound Heterozygous Variants in Pediatric Cancers: A Systematic Review

Frontiers in genetics, 2020-05, Vol.11, p.493-493

2020

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Multiplatform single-sample estimates of transcriptional activation

Proceedings of the National Academy of Sciences - PNAS, 2013-10, Vol.110 (44), p.17778-17783

2013

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Fibroblast growth factor in the treatment of burns: A systematic review

Burns, 2022-02, Vol.48 (1), p.104-110

2022

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Functional and transcriptomic characterization of cisplatin-resistant AGS and MKN-28 gastric cancer cell lines

PloS one, 2020-01, Vol.15 (1), p.e0228331-e0228331

2020

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Survival Outcomes of Optimally Treated Colorectal Metastases: The Importance of R0 Status in Surgical Treatment of Hepatic and Peritoneal Surface Disease

Annals of surgical oncology, 2023-07, Vol.30 (7), p.4264-4273

2023

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Supporting Reading Aloud Beginning Prenatally and in Early Infancy: A Randomized Trial in Brazil

Journal of developmental and behavioral pediatrics, 2022-12, Vol.43 (9), p.e590-e597

2022

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Adverse Childhood Experiences: Prevalence and Association With Adolescent Health in Malawi

American journal of preventive medicine, 2020-02, Vol.58 (2), p.285-293

2020

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Blood glucose control and metabolic dysfunction-associated steatotic liver disease in people with type 1 diabetes

Journal of endocrinological investigation, 2024, Vol.47 (9), p.2371-2378

2024

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SGK2, 14-3-3, and HUWE1 Cooperate to Control the Localization, Stability, and Function of the Oncoprotein PTOV1

Molecular cancer research, 2022-02, Vol.20 (2), p.231-243

2022

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ASO Visual Abstract: Conditional Survival After Hepatectomy for Colorectal Liver Metastasis—Results from the Colorectal Liver Operative Metastasis International Collaborative (COLOMIC)

Annals of surgical oncology, 2023-06, Vol.30 (6), p.3423-3424

2023

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TidyGEO: preparing analysis-ready datasets from Gene Expression Omnibus

Journal of integrative bioinformatics, 2024-07, Vol.21 (1), p.D562-6

2024

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Simplifying the development of portable, scalable, and reproducible workflows

eLife, 2021-10, Vol.10

2021

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The DNA methylation landscape of five pediatric-tumor types

PeerJ (San Francisco, CA), 2022-06, Vol.10, p.e13516-e13516, Article e13516

2022

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The ability to classify patients based on gene-expression data varies by algorithm and performance metric

Age-Related Differences in Cortical Thickness Vary by Socioeconomic Status

The molecular landscape of pediatric acute myeloid leukemia reveals recurrent structural alterations and age-specific mutational interactions

Alternative preprocessing of RNA-Sequencing data in The Cancer Genome Atlas leads to improved analysis results

Predicting drug sensitivity of cancer cells based on DNA methylation levels

trioPhaser: using Mendelian inheritance logic to improve genomic phasing of trios

Evaluating a large language model’s ability to solve programming exercises from an introductory bioinformatics course

A cloud-based workflow to quantify transcript-expression levels in public cancer compendia

Toward a methodology for evaluating DNA variants in nuclear families

Effects of germline and somatic events in candidate BRCA-like genes on breast-tumor signatures

Combating subclonal evolution of resistant cancer phenotypes

A Survey of Compound Heterozygous Variants in Pediatric Cancers and Structural Birth Defects

Compound Heterozygous Variants in Pediatric Cancers: A Systematic Review

Multiplatform single-sample estimates of transcriptional activation

Fibroblast growth factor in the treatment of burns: A systematic review

Functional and transcriptomic characterization of cisplatin-resistant AGS and MKN-28 gastric cancer cell lines

Survival Outcomes of Optimally Treated Colorectal Metastases: The Importance of R0 Status in Surgical Treatment of Hepatic and Peritoneal Surface Disease

Supporting Reading Aloud Beginning Prenatally and in Early Infancy: A Randomized Trial in Brazil

Adverse Childhood Experiences: Prevalence and Association With Adolescent Health in Malawi

Blood glucose control and metabolic dysfunction-associated steatotic liver disease in people with type 1 diabetes

SGK2, 14-3-3, and HUWE1 Cooperate to Control the Localization, Stability, and Function of the Oncoprotein PTOV1

ASO Visual Abstract: Conditional Survival After Hepatectomy for Colorectal Liver Metastasis—Results from the Colorectal Liver Operative Metastasis International Collaborative (COLOMIC)

TidyGEO: preparing analysis-ready datasets from Gene Expression Omnibus

Simplifying the development of portable, scalable, and reproducible workflows

The DNA methylation landscape of five pediatric-tumor types

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