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Pathology imaging informatics for quantitative analysis of whole-slide images

Journal of the American Medical Informatics Association : JAMIA, 2013-11, Vol.20 (6), p.1099-1108

2013

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Assessing the impact of human genome annotation choice on RNA-seq expression estimates

BMC bioinformatics, 2013, Vol.14 Suppl 11 (S11), p.S8-S8, Article S8

2013

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Detecting and correcting systematic variation in large-scale RNA sequencing data

Nature biotechnology, 2014-09, Vol.32 (9), p.888-895

2014

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Discovery of Lipidome Alterations Following Traumatic Brain Injury via High-Resolution Metabolomics

Journal of proteome research, 2018-06, Vol.17 (6), p.2131-2143

2018

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Finding Candida auris in public metagenomic repositories

PloS one, 2024-01, Vol.19 (1), p.e0291406-e0291406

2024

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Using targeted next-generation sequencing to characterize genetic differences associated with insecticide resistance in Culex quinquefasciatus populations from the southern U.S

PloS one, 2019-07, Vol.14 (7), p.e0218397-e0218397

2019

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Histological image classification using biologically interpretable shape-based features

BMC medical imaging, 2013-03, Vol.13 (1), p.9-9, Article 9

2013

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Introduction: Considering “Buddhist Literacy” in Early Modern Vietnamese Print Culture

Journal of Vietnamese studies (Berkeley, Calif.), 2018-07, Vol.13 (3), p.2

Phan, John D

2018

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Removing Batch Effects From Histopathological Images for Enhanced Cancer Diagnosis

IEEE journal of biomedical and health informatics, 2014-05, Vol.18 (3), p.765-772

2014

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Impact of RNA-seq data analysis algorithms on gene expression estimation and downstream prediction

Scientific reports, 2020-10, Vol.10 (1), p.17925-17925, Article 17925

2020

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omniBiomarker: A Web-Based Application for Knowledge-Driven Biomarker Identification

IEEE transactions on biomedical engineering, 2013-12, Vol.60 (12), p.3364-3367

2013

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Physical and biological aspects of renal vitrification

Organogenesis, 2009-07, Vol.5 (3), p.167-175

2009

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Convergence of biomarkers, bioinformatics and nanotechnology for individualized cancer treatment

Trends in biotechnology (Regular ed.), 2009-06, Vol.27 (6), p.350-358

2009

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Win percentage: a novel measure for assessing the suitability of machine classifiers for biological problems

BMC bioinformatics, 2012-03, Vol.13 Suppl 3 (Suppl 3), p.S7-S7, Article S7

2012

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caCORRECT2: Improving the accuracy and reliability of microarray data in the presence of artifacts

BMC bioinformatics, 2011-09, Vol.12 (1), p.383-383, Article 383

2011

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Automatic batch-invariant color segmentation of histological cancer images

2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011, Vol.2011, p.657-660

2011

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SL-Cloud: A Cloud-based resource to support synthetic lethal interaction discovery [version 1; peer review: 1 approved, 1 approved with reservations]

F1000 research, 2022, Vol.11, p.493-493

2022

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Multiscale Integration of -Omic, Imaging, and Clinical Data in Biomedical Informatics

IEEE reviews in biomedical engineering, 2012, Vol.5, p.74-87

2012

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Robust Microarray Meta-Analysis Identifies Differentially Expressed Genes for Clinical Prediction

TheScientificWorld, 2012-01, Vol.2012, p.989637-9

2012

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Cardiovascular transcriptomics and epigenomics using next-generation sequencing: challenges, progress, and opportunities

Circulation. Cardiovascular genetics, 2014-10, Vol.7 (5), p.701

2014

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Diagnostic biomarkers for renal cell carcinoma: selection using novel bioinformatics systems for microarray data analysis

Human pathology, 2009-12, Vol.40 (12), p.1671-1678

2009

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Effect of low-expression gene filtering on detection of differentially expressed genes in RNA-seq data

2015 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), 2015-01, Vol.2015, p.6461-6464

2015

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Reverse engineering biomolecular systems using -omic data: challenges, progress and opportunities

Briefings in bioinformatics, 2012-07, Vol.13 (4), p.430-445

2012

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Increased venous pressure: Another beautiful idea bites the dust

Cryobiology, 2022-12, Vol.109, p.17-18

2022

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Integration of multi-modal biomedical data to predict cancer grade and patient survival

2016 IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI), 2016-02, p.577-580

2016

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Pathology imaging informatics for quantitative analysis of whole-slide images

Assessing the impact of human genome annotation choice on RNA-seq expression estimates

Detecting and correcting systematic variation in large-scale RNA sequencing data

Discovery of Lipidome Alterations Following Traumatic Brain Injury via High-Resolution Metabolomics

Finding Candida auris in public metagenomic repositories

Using targeted next-generation sequencing to characterize genetic differences associated with insecticide resistance in Culex quinquefasciatus populations from the southern U.S

Histological image classification using biologically interpretable shape-based features

Introduction: Considering “Buddhist Literacy” in Early Modern Vietnamese Print Culture

Removing Batch Effects From Histopathological Images for Enhanced Cancer Diagnosis

Impact of RNA-seq data analysis algorithms on gene expression estimation and downstream prediction

omniBiomarker: A Web-Based Application for Knowledge-Driven Biomarker Identification

Physical and biological aspects of renal vitrification

Convergence of biomarkers, bioinformatics and nanotechnology for individualized cancer treatment

Win percentage: a novel measure for assessing the suitability of machine classifiers for biological problems

caCORRECT2: Improving the accuracy and reliability of microarray data in the presence of artifacts

Automatic batch-invariant color segmentation of histological cancer images

SL-Cloud: A Cloud-based resource to support synthetic lethal interaction discovery [version 1; peer review: 1 approved, 1 approved with reservations]

Multiscale Integration of -Omic, Imaging, and Clinical Data in Biomedical Informatics

Robust Microarray Meta-Analysis Identifies Differentially Expressed Genes for Clinical Prediction

Cardiovascular transcriptomics and epigenomics using next-generation sequencing: challenges, progress, and opportunities

Diagnostic biomarkers for renal cell carcinoma: selection using novel bioinformatics systems for microarray data analysis

Effect of low-expression gene filtering on detection of differentially expressed genes in RNA-seq data

Reverse engineering biomolecular systems using -omic data: challenges, progress and opportunities

Increased venous pressure: Another beautiful idea bites the dust

Integration of multi-modal biomedical data to predict cancer grade and patient survival

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