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R-loop proximity proteomics identifies a role of DDX41 in transcription-associated genomic instability

Nature communications, 2021-12, Vol.12 (1), p.7314-7314, Article 7314

2021

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Annocript: a flexible pipeline for the annotation of transcriptomes able to identify putative long noncoding RNAs

Bioinformatics, 2015-07, Vol.31 (13), p.2199-2201

2015

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Genome-wide Nucleotide-Resolution Mapping of DNA Replication Patterns, Single-Strand Breaks, and Lesions by GLOE-Seq

Molecular cell, 2020-06, Vol.78 (5), p.975-985.e7

2020

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Lin28 is induced in primed embryonic stem cells and regulates let‐7‐independent events

The FASEB journal, 2017-03, Vol.31 (3), p.1046-1058

2017

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Proteomic profiling of VCP substrates links VCP to K6‐linked ubiquitylation and c‐Myc function

EMBO reports, 2018-04, Vol.19 (4), p.n/a

2018

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Lipopolysaccharide-Elicited TSLPR Expression Enriches a Functionally Discrete Subset of Human CD14 + CD1c + Monocytes

The Journal of immunology (1950), 2017-05, Vol.198 (9), p.3426-3435

2017

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Genome-wide detection of DNA double-strand breaks by in-suspension BLISS

Nature protocols, 2020-12, Vol.15 (12), p.3894-3941

2020

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Transcriptome sequencing of three Pseudo-nitzschia species reveals comparable gene sets and the presence of Nitric Oxide Synthase genes in diatoms

Scientific reports, 2015-07, Vol.5 (1), p.12329, Article 12329

2015

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Loss of the Otx2-Binding Site in the Nanog Promoter Affects the Integrity of Embryonic Stem Cell Subtypes and Specification of Inner Cell Mass-Derived Epiblast

Cell reports (Cambridge), 2016-06, Vol.15 (12), p.2651-2664

2016

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Identification of LINE retrotransposons and long non-coding RNAs expressed in the octopus brain

BMC biology, 2022-05, Vol.20 (1), p.116-116, Article 116

2022

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The micro-RNA 199b-5p regulatory circuit involves Hes1, CD15, and epigenetic modifications in medulloblastoma

Neuro-oncology (Charlottesville, Va.), 2012-05, Vol.14 (5), p.596-612

2012

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Preparation and Analysis of GLOE-Seq Libraries for Genome-Wide Mapping of DNA Replication Patterns, Single-Strand Breaks, and Lesions

STAR protocols, 2020-09, Vol.1 (2), p.100076-100076, Article 100076

2020

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The metallophosphodiesterase Mpped2 impairs tumorigenesis in neuroblastoma

Cell cycle (Georgetown, Tex.), 2012-02, Vol.11 (3), p.569-581

2012

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Detection of erbB2 copy number variations in plasma of patients with esophageal carcinoma

BMC cancer, 2011-04, Vol.11 (1), p.126-126, Article 126

2011

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An Introduction to the Major Features of a Scripting Language for JADE Agents

AIIA 2018 – Advances in Artificial Intelligence, p.3-14

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Common genetic variants in NEFL influence gene expression and neuroblastoma risk

Cancer research (Chicago, Ill.), 2014-12, Vol.74 (23), p.6913-6924

2014

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Exploratory Experiments on Programming Autonomous Robots in Jadescript

Electronic proceedings in theoretical computer science, 2020, Vol.319, p.55-67

2020

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Imperative and Event-Driven Programming of Interoperable Software Agents

Engineering Multi-Agent Systems, p.23-40

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Hmga2 is necessary for Otx2-dependent exit of embryonic stem cells from the pluripotent ground state

BMC biology, 2016-03, Vol.14 (24), p.24-24, Article 24

2016

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An 18 gene expression-based score classifier predicts the clinical outcome in stage 4 neuroblastoma

Journal of translational medicine, 2016-05, Vol.14 (1), p.142-142, Article 142

2016

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A Comprehensive Presentation of the Jadescript Agent-Oriented Programming Language

Multi-Agent Systems, 2023, Vol.14282, p.100-115

2023

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LPS-elicited TSLPR expression enriches a functionally discrete subset of human CD14+ CD1c+ monocytes

The Journal of immunology (1950), 2017-05, Vol.198 (1_Supplement), p.75-75.1

2017

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R-loop proximity proteomics identifies a role of DDX41 in transcription-associated genomic instability

Annocript: a flexible pipeline for the annotation of transcriptomes able to identify putative long noncoding RNAs

Spatial Chromosome Folding and Active Transcription Drive DNA Fragility and Formation of Oncogenic MLL Translocations

Genome-wide Nucleotide-Resolution Mapping of DNA Replication Patterns, Single-Strand Breaks, and Lesions by GLOE-Seq

Lin28 is induced in primed embryonic stem cells and regulates let‐7‐independent events

Proteomic profiling of VCP substrates links VCP to K6‐linked ubiquitylation and c‐Myc function

Lipopolysaccharide-Elicited TSLPR Expression Enriches a Functionally Discrete Subset of Human CD14 + CD1c + Monocytes

Genome-wide detection of DNA double-strand breaks by in-suspension BLISS

Transcriptome sequencing of three Pseudo-nitzschia species reveals comparable gene sets and the presence of Nitric Oxide Synthase genes in diatoms

MicroRNA-199b-5p impairs cancer stem cells through negative regulation of HES1 in medulloblastoma

Loss of the Otx2-Binding Site in the Nanog Promoter Affects the Integrity of Embryonic Stem Cell Subtypes and Specification of Inner Cell Mass-Derived Epiblast

Identification of LINE retrotransposons and long non-coding RNAs expressed in the octopus brain

The micro-RNA 199b-5p regulatory circuit involves Hes1, CD15, and epigenetic modifications in medulloblastoma

Preparation and Analysis of GLOE-Seq Libraries for Genome-Wide Mapping of DNA Replication Patterns, Single-Strand Breaks, and Lesions

The metallophosphodiesterase Mpped2 impairs tumorigenesis in neuroblastoma

Detection of erbB2 copy number variations in plasma of patients with esophageal carcinoma

An Introduction to the Major Features of a Scripting Language for JADE Agents

Common genetic variants in NEFL influence gene expression and neuroblastoma risk

Exploratory Experiments on Programming Autonomous Robots in Jadescript

Imperative and Event-Driven Programming of Interoperable Software Agents

Hmga2 is necessary for Otx2-dependent exit of embryonic stem cells from the pluripotent ground state

An 18 gene expression-based score classifier predicts the clinical outcome in stage 4 neuroblastoma

High‐resolution transcriptomic and epigenetic profiling identifies novel regulators of COPD

A Comprehensive Presentation of the Jadescript Agent-Oriented Programming Language

LPS-elicited TSLPR expression enriches a functionally discrete subset of human CD14+ CD1c+ monocytes

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